KarrLab/obj_tables

!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='ecoli_wortel_2018' date='2019-01-04' type='Data' class='Compartment',,,,,,,
!ID,!Name,!Size,!Unit,!SBOTerm,,,
Cell,Cell,1,,,,,
external,external,1,,,,,
,,,,,,,
!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='ecoli_wortel_2018' date='2019-01-04' type='Data' class='Compound',,,,,,,
!ID,!Name,!Location,!IsConstant,!SBOTerm,!InitialConcentration,!hasOnlySubstanceUnits,
ACETATE,acetate,Cell,FALSE,,0,FALSE,
ACETATE_ext,extracellular acetate,external,FALSE,,0,FALSE,
ACETYL_CoA,acetyl-coenzyme A,Cell,FALSE,,0,FALSE,
ACALD,acetaldehyde,Cell,FALSE,,0,FALSE,
ACETYL_P,acetyl-phosphate,Cell,FALSE,,0,FALSE,
ADP,adenosine diphosphate,Cell,FALSE,,0,FALSE,
AKG,alpha-ketoglutarate,Cell,FALSE,,0,FALSE,
ATP,adenosine triphosphate,Cell,FALSE,,0,FALSE,
ATP_main,maintenance energy,external,FALSE,,0,FALSE,
BIOMASS,biomass,external,FALSE,,0,FALSE,
CITRATE,citrate,Cell,FALSE,,0,FALSE,
CO2,carbon dioxyde,Cell,FALSE,,0,FALSE,
CO2_ext,extracellular carbon dioxyde,external,FALSE,,0,FALSE,
CoASH,coenzyme A,Cell,FALSE,,0,FALSE,
DHAP,dihydroxyacetone phosphate,Cell,FALSE,,0,FALSE,
ERYTH_4_P,erythrose-4-phosphate,Cell,FALSE,,0,FALSE,
ETOH,ethanol,Cell,FALSE,,0,FALSE,
ETOH_ext,extracellular ethanol,external,FALSE,,0,FALSE,
FORMATE,formate,Cell,FALSE,,0,FALSE,
FORMATE_ext,extracellular formate,external,FALSE,,0,FALSE,
FRU_6_P,fructose-6-phosphate,Cell,FALSE,,0,FALSE,
FRU_BIS_P,fructose bi-phosphate,Cell,FALSE,,0,FALSE,
FUMARATE,fumarate,Cell,FALSE,,0,FALSE,
DPG,"1,3-bisphospho-D-glycerate",Cell,FALSE,,0,FALSE,
PG3,3-phospho-D-glycerate,Cell,FALSE,,0,FALSE,
GA_3P,glyceraldehyde-3-phosphate,Cell,FALSE,,0,FALSE,
GLU_6_P,glucose-6-phosphate,Cell,FALSE,,0,FALSE,
GLU_LAC_6_P,6-Phosphogluconolactonase,Cell,FALSE,,0,FALSE,
GLUCO_6_P,6-phosphogluconate,Cell,FALSE,,0,FALSE,
KDPG,2-keto-3-deoxy-6-phosphogluconate,Cell,FALSE,,0,FALSE,
GLU_ext,extracellular glucose,external,FALSE,,0,FALSE,
ISOCIT,isocitrate,Cell,FALSE,,0,FALSE,
LACTATE,lactate,Cell,FALSE,,0,FALSE,
LACTATE_ext,extracellular lactate,external,FALSE,,0,FALSE,
MALATE,malate,Cell,FALSE,,0,FALSE,
NAD,nicotinamide adenine dinucleotide,Cell,FALSE,,0,FALSE,
NADH,nicotinamide adenine dinucleotide,Cell,FALSE,,0,FALSE,
NH3,ammonium,Cell,FALSE,,0,FALSE,
NH3_ext,extracellular ammonium,external,FALSE,,0,FALSE,
OXALO,oxaloacetate,Cell,FALSE,,0,FALSE,
OXY_ext,extracellular monooxygen,external,FALSE,,0,FALSE,
PEP,phosphoenolpyruvate,Cell,FALSE,,0,FALSE,
PG,phosphoglycerate,Cell,FALSE,,0,FALSE,
PYR,pyruvate,Cell,FALSE,,0,FALSE,
RIBOSE_5_P,ribose-5-phosphate,Cell,FALSE,,0,FALSE,
RIBULOSE_5_P,ribulose-5-phosphate,Cell,FALSE,,0,FALSE,
SED_7_P,sedoheptulose-7-phosphate,Cell,FALSE,,0,FALSE,
SUCC,succinate,Cell,FALSE,,0,FALSE,
SUCC_CoA,succinyl-coenzyme A,Cell,FALSE,,0,FALSE,
SUCC_ext,extracellular succinate,external,FALSE,,0,FALSE,
XYL_5_P,xylulose-5-phosphate,Cell,FALSE,,0,FALSE,
,,,,,,,
!!ObjTables objTablesVersion='0.0.8' schema='SBtab' document='ecoli_wortel_2018' date='2019-01-04' type='Data' class='Reaction',,,,,,,
!ID,!Name,!ReactionFormula,!Location,!Regulator,!KineticLaw,!SBOTerm,!IsReversible
R54ra,R54ra,ACETYL_CoA + NADH <=> ACALD + NAD + CoASH,,,,,TRUE
R54rb,R54rb,ACALD + NADH <=> ETOH + NAD,,,,,TRUE
R13r,R13r,RIBOSE_5_P + XYL_5_P <=> SED_7_P + GA_3P,,,,,TRUE
R26r,R26r,SUCC_CoA + ADP <=> SUCC + ATP + CoASH,,,,,TRUE
R15r,R15r,ERYTH_4_P + XYL_5_P <=> GA_3P + FRU_6_P,,,,,TRUE
R96,R96,FORMATE <=> FORMATE_ext,,,,,FALSE
R94,R94,LACTATE <=> LACTATE_ext,,,,,FALSE
R95,R95,SUCC <=> SUCC_ext,,,,,FALSE
R93,R93,NH3_ext <=> NH3,,,,,FALSE
R90,R90,ETOH <=> ETOH_ext,,,,,FALSE
R91,R91,ACETATE <=> ACETATE_ext,,,,,FALSE
R8r,R8r,PG <=> PEP,,,,,TRUE
R10a,R10a,GLU_6_P + NAD <=> GLU_LAC_6_P + NADH,,,,,FALSE
R10b,R10b,GLU_LAC_6_P <=> GLUCO_6_P,,,,,FALSE
R10c,R10c,GLUCO_6_P + NAD <=> RIBULOSE_5_P + NADH + CO2,,,,,FALSE
R28r,R28r,FUMARATE <=> MALATE,,,,,TRUE
R3,R3,FRU_6_P + ATP <=> FRU_BIS_P + ADP,,,,,FALSE
R70,R70,4.0 GLU_6_P + 13.0 RIBOSE_5_P + 5.0 ERYTH_4_P + 32.0 PEP + 38.0 PYR + 41.0 ACETYL_CoA + 14.0 AKG + 24.0 OXALO + 547.0 ATP + 178.0 NADH + 139.0 NH3 <=> BIOMASS + 41.0 CoASH + 547.0 ADP + 178.0 NAD + 2.0 CO2,,,,,FALSE
R6r,R6r,GA_3P <=> DHAP,,,,,TRUE
R97r,R97r,CO2 <=> CO2_ext,,,,,TRUE
R2r,R2r,GLU_6_P <=> FRU_6_P,,,,,TRUE
R55a,R55a,ACETYL_CoA <=> ACETYL_P + CoASH,,,,,FALSE
R55b,R55b,ACETYL_P + ADP <=> ACETATE + ATP,,,,,FALSE
R4,R4,FRU_BIS_P <=> FRU_6_P,,,,,FALSE
R12r,R12r,RIBULOSE_5_P <=> RIBOSE_5_P,,,,,TRUE
R1,R1,GLU_ext + PEP <=> GLU_6_P + PYR,,,,,FALSE
R27,R27,SUCC + ADP + OXY_ext <=> FUMARATE + ATP,,,,,FALSE
R27b,R27b,FUMARATE + NADH <=> SUCC + NAD,,,,,FALSE
R23r,R23r,CITRATE <=> ISOCIT,,,,,TRUE
R9,R9,PEP + ADP <=> PYR + ATP,,,,,FALSE
R14r,R14r,GA_3P + SED_7_P <=> ERYTH_4_P + FRU_6_P,,,,,TRUE
RR9,RR9,PYR + 2.0 ATP <=> PEP + 2.0 ADP,,,,,FALSE
R53r,R53r,PYR + NADH <=> LACTATE + NAD,,,,,TRUE
R80,R80,NADH + 2.0 ADP + OXY_ext <=> NAD + 2.0 ATP,,,,,FALSE
R82,R82,ATP <=> ADP + ATP_main,,,,,FALSE
R29r,R29r,MALATE + NAD <=> OXALO + NADH,,,,,TRUE
R7ra,R7ra,GA_3P + NAD <=> DPG + NADH,,,,,TRUE
R7rb,R7rb,DPG + ADP <=> PG3 + ATP,,,,,TRUE
R7rc,R7rc,PG3 <=> PG,,,,,TRUE
R41,R41,MALATE + NAD <=> PYR + NADH + CO2,,,,,FALSE
R40,R40,PEP + CO2 <=> OXALO,,,,,FALSE
R11r,R11r,RIBULOSE_5_P <=> XYL_5_P,,,,,TRUE
R42,R42,OXALO + ATP <=> PEP + ADP + CO2,,,,,FALSE
R5r,R5r,FRU_BIS_P <=> DHAP + GA_3P,,,,,TRUE
R25,R25,AKG + NAD + CoASH <=> NADH + SUCC_CoA + CO2,,,,,FALSE
R24,R24,ISOCIT + NAD <=> AKG + NADH + CO2,,,,,FALSE
R22,R22,OXALO + ACETYL_CoA <=> CITRATE + CoASH,,,,,FALSE
R21,R21,PYR + NAD + CoASH <=> ACETYL_CoA + CO2 + NADH,,,,,FALSE
R20,R20,PYR + CoASH <=> ACETYL_CoA + FORMATE,,,,,FALSE
R60,R60,GLUCO_6_P <=> KDPG,,,,,FALSE
R61r,R61r,KDPG <=> GA_3P + PYR,,,,,TRUE