KarrLab/obj_tables

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examples/sbtab/hynne.tsv/Reaction.tsv

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!!ObjTables schema='SBtab' type='Data' tableFormat='row' class='Reaction' name='Reaction' date='2020-07-18 12:14:02' objTablesVersion='1.0.5' document='BIOMD0000000061'                                                    
!Name    !ID    !ReactionFormula    !IsComplete    !IsReversible    !IsInEquilibrium    !IsExchangeReaction    !IsNonEnzymatic    !KineticLaw    !BuildReaction    !BuildEnzyme    !BuildEnzymeProduction    !Identifiers:ec-code    !Regulator
Glucose Mixed flow to extracellular medium    vinGlc    GlcX0 <=> GlcX    False    True    False    False    False    extracellular * k0 * (GlcX0 - GlcX)    False    False    False        
Glucose uptake    vGlcTrans    GlcX <=> 59.0 Glc    False    True    False    False    False    extracellular * V2f / Yvol * (GlcX / K2Glc / (1 + GlcX / K2Glc + (P2 * (GlcX / K2Glc) + 1) / (P2 * (Glc / K2Glc) + 1) * (1 + Glc / K2Glc + G6P / K2IG6P + Glc * G6P / (K2Glc * K2IIG6P)))) - cytosol * V2r / Yvol * (Glc / K2Glc / (1 + Glc / K2Glc + (P2 * (Glc / K2Glc) + 1) / (P2 * (GlcX / K2Glc) + 1) * (1 + GlcX / K2Glc) + G6P / K2IG6P + Glc * G6P / (K2Glc * K2IIG6P)))    False    False    False        G6P
Hexokinase    vHK    ATP + Glc <=> G6P + ADP    False    True    False    False    False    cytosol * V3m * ATP * Glc / (K3DGlc * K3ATP + K3Glc * ATP + K3ATP * Glc + Glc * ATP)    False    False    False    2.7.1.2    
Phosphoglucoisomerase    vPGI    G6P <=> F6P    False    True    False    False    False    cytosol * (V4f * G6P / (K4G6P + G6P + K4G6P / K4F6P * F6P) - V4r * (F6P / K4eq) / (K4G6P + G6P + K4G6P / K4F6P * F6P))    False    False    False    5.3.1.9    
Phosphofructokinase    vPFK    F6P + ATP <=> FBP + ADP    False    True    False    False    False    cytosol * (V5m * pow(F6P, 2) / (K5 * (1 + kappa5 * (ATP / AMP) * (ATP / AMP)) + pow(F6P, 2)))    False    False    False    2.7.1.11    AMP
Aldolase    vALD    FBP <=> GAP + DHAP    False    True    False    False    False    cytosol * (V6f * FBP / (K6FBP + FBP + GAP * K6DHAP * V6f / (K6eq * V6f * ratio6) + DHAP * K6GAP * V6f / (K6eq * V6f * ratio6) + FBP * GAP / K6IGAP + GAP * DHAP * V6f / (K6eq * V6f * ratio6)) - V6f * GAP * DHAP / K6eq / (K6FBP + FBP + GAP * K6DHAP * V6f / (K6eq * V6f * ratio6) + DHAP * K6GAP * V6f / (K6eq * V6f * ratio6) + FBP * GAP / K6IGAP + GAP * DHAP * V6f / (K6eq * V6f * ratio6)))    False    False    False    4.1.2.13    
Triosephosphate isomerase    vTIM    DHAP <=> GAP    False    True    False    False    False    cytosol * (V7f * DHAP / (K7DHAP + DHAP + K7DHAP / K7GAP * GAP) - V7r * (GAP / K7eq) / (K7DHAP + DHAP + K7DHAP / K7GAP * GAP))    False    False    False    5.3.1.1    
Glyceraldehyde 3-phosphate dehydrogenase    vGAPDH    GAP + NAD <=> NADH + BPG    False    True    False    False    False    cytosol * (V8f * GAP * NAD / K8GAP / K8NAD / ((1 + GAP / K8GAP + BPG / K8BPG) * (1 + NAD / K8NAD + NADH / K8NADH)) - V8r * BPG * NADH / K8eq / K8GAP / K8NAD / ((1 + GAP / K8GAP + BPG / K8BPG) * (1 + NAD / K8NAD + NADH / K8NADH)))    False    False    False    1.2.1.12    
Phosphoenolpyruvate synthesis    vlpPEP    BPG + ADP <=> PEP + ATP    False    True    False    False    False    cytosol * (k9f * BPG * ADP - k9r * PEP * ATP)    False    False    False    4.2.1.11    
Pyruvate kinase    vPK    ADP + PEP <=> Pyr + ATP    False    True    False    False    False    cytosol * (V10m * ADP * PEP / ((K10PEP + PEP) * (K10ADP + ADP)))    False    False    False    2.7.1.40    
Pyruvate decarboxylase    vPDC    Pyr <=> ACA    False    True    False    False    False    cytosol * (V11m * Pyr / (K11 + Pyr))    False    False    False    4.1.1.1    
Alcohol dehydrogenase    vADH    NADH + ACA <=> NAD + EtOH    False    True    False    False    False    cytosol * (V12m * ACA * NADH / ((K12NADH + NADH) * (K12ACA + ACA)))    False    False    False    1.1.1.1    
Ethanol out    vdifEtOH    59.0 EtOH <=> EtOHX    False    True    False    False    False    k13 / Yvol * (cytosol * EtOH - extracellular * EtOHX)    False    False    False        
Ethanol flow    voutEtOH    EtOHX <=> P    False    True    False    False    False    extracellular * k0 * EtOHX    False    False    False        
Glycerol synthesis    vlpGlyc    DHAP + NADH <=> Glyc + NAD    False    True    False    False    False    cytosol * (V15m * DHAP / (K15DHAP * (1 + K15INADH / NADH * (1 + NAD / K15INAD)) + DHAP * (1 + K15NADH / NADH * (1 + NAD / K15INAD))))    False    False    False    1.1.1.6    
Glycerol out    vdifGlyc    59.0 Glyc <=> GlycX    False    True    False    False    False    k16 / Yvol * (cytosol * Glyc - extracellular * GlycX)    False    False    False        
Glycerol flow    voutGlyc    GlycX <=> P    False    True    False    False    False    extracellular * k0 * GlycX    False    False    False        
Acetaldehyde out    vdifACA    59.0 ACA <=> ACAX    False    True    False    False    False    k18 / Yvol * (cytosol * ACA - extracellular * ACAX)    False    False    False        
Acetaldehyde flow    voutACA    ACAX <=> P    False    True    False    False    False    extracellular * k0 * ACAX    False    False    False        
Cyanide-Acetaldehyde flow    vlacto    CNX + ACAX <=> P    False    True    False    False    False    extracellular * k20 * ACAX * CNX    False    False    False        
Cyanide flow    vinCN    CNX0 <=> CNX    False    True    False    False    False    extracellular * k0 * (CNX0 - CNX)    False    False    False        
Storage    vstorage    ATP + G6P <=> ADP    False    True    False    False    False    cytosol * k22 * ATP * G6P    False    False    False        
ATP consumption    vconsum    ATP <=> ADP    False    True    False    False    False    cytosol * k23 * ATP    False    False    False        
Adenylate kinase    vAK    ATP + AMP <=> 2.0 ADP    False    True    False    False    False    cytosol * (k24f * AMP * ATP - k24r * pow(ADP, 2))    False    False    False    2.7.4.3