examples/sbtab/hynne.tsv/Reaction.tsv
!!ObjTables schema='SBtab' type='Data' tableFormat='row' class='Reaction' name='Reaction' date='2020-07-18 12:14:02' objTablesVersion='1.0.5' document='BIOMD0000000061'
!Name !ID !ReactionFormula !IsComplete !IsReversible !IsInEquilibrium !IsExchangeReaction !IsNonEnzymatic !KineticLaw !BuildReaction !BuildEnzyme !BuildEnzymeProduction !Identifiers:ec-code !Regulator
Glucose Mixed flow to extracellular medium vinGlc GlcX0 <=> GlcX False True False False False extracellular * k0 * (GlcX0 - GlcX) False False False
Glucose uptake vGlcTrans GlcX <=> 59.0 Glc False True False False False extracellular * V2f / Yvol * (GlcX / K2Glc / (1 + GlcX / K2Glc + (P2 * (GlcX / K2Glc) + 1) / (P2 * (Glc / K2Glc) + 1) * (1 + Glc / K2Glc + G6P / K2IG6P + Glc * G6P / (K2Glc * K2IIG6P)))) - cytosol * V2r / Yvol * (Glc / K2Glc / (1 + Glc / K2Glc + (P2 * (Glc / K2Glc) + 1) / (P2 * (GlcX / K2Glc) + 1) * (1 + GlcX / K2Glc) + G6P / K2IG6P + Glc * G6P / (K2Glc * K2IIG6P))) False False False G6P
Hexokinase vHK ATP + Glc <=> G6P + ADP False True False False False cytosol * V3m * ATP * Glc / (K3DGlc * K3ATP + K3Glc * ATP + K3ATP * Glc + Glc * ATP) False False False 2.7.1.2
Phosphoglucoisomerase vPGI G6P <=> F6P False True False False False cytosol * (V4f * G6P / (K4G6P + G6P + K4G6P / K4F6P * F6P) - V4r * (F6P / K4eq) / (K4G6P + G6P + K4G6P / K4F6P * F6P)) False False False 5.3.1.9
Phosphofructokinase vPFK F6P + ATP <=> FBP + ADP False True False False False cytosol * (V5m * pow(F6P, 2) / (K5 * (1 + kappa5 * (ATP / AMP) * (ATP / AMP)) + pow(F6P, 2))) False False False 2.7.1.11 AMP
Aldolase vALD FBP <=> GAP + DHAP False True False False False cytosol * (V6f * FBP / (K6FBP + FBP + GAP * K6DHAP * V6f / (K6eq * V6f * ratio6) + DHAP * K6GAP * V6f / (K6eq * V6f * ratio6) + FBP * GAP / K6IGAP + GAP * DHAP * V6f / (K6eq * V6f * ratio6)) - V6f * GAP * DHAP / K6eq / (K6FBP + FBP + GAP * K6DHAP * V6f / (K6eq * V6f * ratio6) + DHAP * K6GAP * V6f / (K6eq * V6f * ratio6) + FBP * GAP / K6IGAP + GAP * DHAP * V6f / (K6eq * V6f * ratio6))) False False False 4.1.2.13
Triosephosphate isomerase vTIM DHAP <=> GAP False True False False False cytosol * (V7f * DHAP / (K7DHAP + DHAP + K7DHAP / K7GAP * GAP) - V7r * (GAP / K7eq) / (K7DHAP + DHAP + K7DHAP / K7GAP * GAP)) False False False 5.3.1.1
Glyceraldehyde 3-phosphate dehydrogenase vGAPDH GAP + NAD <=> NADH + BPG False True False False False cytosol * (V8f * GAP * NAD / K8GAP / K8NAD / ((1 + GAP / K8GAP + BPG / K8BPG) * (1 + NAD / K8NAD + NADH / K8NADH)) - V8r * BPG * NADH / K8eq / K8GAP / K8NAD / ((1 + GAP / K8GAP + BPG / K8BPG) * (1 + NAD / K8NAD + NADH / K8NADH))) False False False 1.2.1.12
Phosphoenolpyruvate synthesis vlpPEP BPG + ADP <=> PEP + ATP False True False False False cytosol * (k9f * BPG * ADP - k9r * PEP * ATP) False False False 4.2.1.11
Pyruvate kinase vPK ADP + PEP <=> Pyr + ATP False True False False False cytosol * (V10m * ADP * PEP / ((K10PEP + PEP) * (K10ADP + ADP))) False False False 2.7.1.40
Pyruvate decarboxylase vPDC Pyr <=> ACA False True False False False cytosol * (V11m * Pyr / (K11 + Pyr)) False False False 4.1.1.1
Alcohol dehydrogenase vADH NADH + ACA <=> NAD + EtOH False True False False False cytosol * (V12m * ACA * NADH / ((K12NADH + NADH) * (K12ACA + ACA))) False False False 1.1.1.1
Ethanol out vdifEtOH 59.0 EtOH <=> EtOHX False True False False False k13 / Yvol * (cytosol * EtOH - extracellular * EtOHX) False False False
Ethanol flow voutEtOH EtOHX <=> P False True False False False extracellular * k0 * EtOHX False False False
Glycerol synthesis vlpGlyc DHAP + NADH <=> Glyc + NAD False True False False False cytosol * (V15m * DHAP / (K15DHAP * (1 + K15INADH / NADH * (1 + NAD / K15INAD)) + DHAP * (1 + K15NADH / NADH * (1 + NAD / K15INAD)))) False False False 1.1.1.6
Glycerol out vdifGlyc 59.0 Glyc <=> GlycX False True False False False k16 / Yvol * (cytosol * Glyc - extracellular * GlycX) False False False
Glycerol flow voutGlyc GlycX <=> P False True False False False extracellular * k0 * GlycX False False False
Acetaldehyde out vdifACA 59.0 ACA <=> ACAX False True False False False k18 / Yvol * (cytosol * ACA - extracellular * ACAX) False False False
Acetaldehyde flow voutACA ACAX <=> P False True False False False extracellular * k0 * ACAX False False False
Cyanide-Acetaldehyde flow vlacto CNX + ACAX <=> P False True False False False extracellular * k20 * ACAX * CNX False False False
Cyanide flow vinCN CNX0 <=> CNX False True False False False extracellular * k0 * (CNX0 - CNX) False False False
Storage vstorage ATP + G6P <=> ADP False True False False False cytosol * k22 * ATP * G6P False False False
ATP consumption vconsum ATP <=> ADP False True False False False cytosol * k23 * ATP False False False
Adenylate kinase vAK ATP + AMP <=> 2.0 ADP False True False False False cytosol * (k24f * AMP * ATP - k24r * pow(ADP, 2)) False False False 2.7.4.3