examples/sbtab/jiang_model.yml
Compartment:
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__type: Compartment
comment: ''
description: ''
i_d: CYTOPLASM
identifiers: ''
identifiers_sbo_go: ''
miriam_annotations: ''
name: cytoplasm
outer_compartment: ''
outer_compartment_s_b_m_l_compartment_id: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_compartment_id: ''
s_b_o_term: ''
size: 1.0
symbol: ''
type: ''
unit: ''
- __id: 1
__type: Compartment
comment: ''
description: ''
i_d: MT_IMS
identifiers: ''
identifiers_sbo_go: ''
miriam_annotations: ''
name: mitochondrial intermembrane space
outer_compartment: ''
outer_compartment_s_b_m_l_compartment_id: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_compartment_id: ''
s_b_o_term: ''
size: 1.0
symbol: ''
type: ''
unit: ''
- __id: 2
__type: Compartment
comment: ''
description: ''
i_d: MT_IM
identifiers: ''
identifiers_sbo_go: ''
miriam_annotations: ''
name: mitochondrial inner membrane
outer_compartment: ''
outer_compartment_s_b_m_l_compartment_id: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_compartment_id: ''
s_b_o_term: ''
size: 1.0
symbol: ''
type: ''
unit: ''
- __id: 3
__type: Compartment
comment: ''
description: ''
i_d: MATRIX
identifiers: ''
identifiers_sbo_go: ''
miriam_annotations: ''
name: mitochondrial matrix
outer_compartment: ''
outer_compartment_s_b_m_l_compartment_id: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_compartment_id: ''
s_b_o_term: ''
size: 1.0
symbol: ''
type: ''
unit: ''
Compound:
- __id: 4
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: GLC
identifiers: ''
identifiers_kegg_compound: C00267
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: glucose
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 5
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: F6P
identifiers: ''
identifiers_kegg_compound: C00085
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: fructose-6-phosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 6
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: FBP
identifiers: ''
identifiers_kegg_compound: C00354
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: fructose-1,6-bisphosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 7
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: GAP
identifiers: ''
identifiers_kegg_compound: C00118
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: glyceraldehyde 3-phosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 8
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: DPG
identifiers: ''
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identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: 1,2-bisphospho-D-glycerate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 9
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: PEP
identifiers: ''
identifiers_kegg_compound: C00074
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: phosphoenolpyruvate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 10
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: PYR_cyt
identifiers: ''
identifiers_kegg_compound: C00022
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: pyruvate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 11
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: AMP
identifiers: ''
identifiers_kegg_compound: C00020
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: adenine monophosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 12
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: LAC
identifiers: ''
identifiers_kegg_compound: C00186
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: lactate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 13
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: G3P
identifiers: ''
identifiers_kegg_compound: C00093
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: glycerol-3-phosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 14
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: DHAP
identifiers: ''
identifiers_kegg_compound: C00111
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: dihydrohxyacetone-phosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 15
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: OXA_cyt
identifiers: ''
identifiers_kegg_compound: C00036
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: oxaloacetate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
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- __id: 16
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: Asp_cyt
identifiers: ''
identifiers_kegg_compound: C00049
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: aspartate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
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symbol: ''
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- __id: 17
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: Glu_cyt
identifiers: ''
identifiers_kegg_compound: C00025
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: glutamate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 18
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: OG_cyt
identifiers: ''
identifiers_kegg_compound: C00026
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: oxoglutarate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 19
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: Mal_cyt
identifiers: ''
identifiers_kegg_compound: C00149
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: malate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 20
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: Acetyl_CoA_cyt
identifiers: ''
identifiers_kegg_compound: C00024
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: acetyl CoA
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
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structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 21
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: CoA_cyt
identifiers: ''
identifiers_kegg_compound: C00010
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: coenzyme A
name_for_plots: ''
position_x: .nan
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reference_d_o_i: ''
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regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
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- __id: 22
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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i_d: IsoCitcyt
identifiers: ''
identifiers_kegg_compound: C00311
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: isocitrate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 23
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: Cit_cyt
identifiers: ''
identifiers_kegg_compound: C00158
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: citrate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
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structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 24
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: ATP_cyt
identifiers: ''
identifiers_kegg_compound: C0002
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: adenine triphosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
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- __id: 25
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: ADP_cyt
identifiers: ''
identifiers_kegg_compound: C0008
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: CYTOPLASM
mass: .nan
miriam_annotations: ''
name: adenine diphosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
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s_b_o_term: ''
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symbol: ''
type: ''
unit: ''
- __id: 26
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
has_only_substance_units: false
i_d: NAD
identifiers: ''
identifiers_kegg_compound: C00003
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identifiers_kegg_compound: C00158
identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: citrate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
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- __id: 52
__type: Compound
charge: 0.0
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compound_sum_formula: ''
description: ''
enzyme_role: ''
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initial_value: .nan
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location: MATRIX
mass: .nan
miriam_annotations: ''
name: isocitrate
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position_x: .nan
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
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structure_formula: ''
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__type: Compound
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compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_sbo_kegg: ''
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location: MATRIX
mass: .nan
miriam_annotations: ''
name: adenine triphosphate
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position_y: .nan
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regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
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unit: ''
- __id: 54
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: adenine diphosphate
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 55
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: NADP+
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
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- __id: 56
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
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initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: NADPH
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 57
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
identifiers_sbo_kegg: ''
initial_concentration: 0.0
initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: NAD+
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 58
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
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initial_value: .nan
is_constant: false
location: MATRIX
mass: .nan
miriam_annotations: ''
name: NADH
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 59
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_sbo_kegg: ''
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is_constant: false
location: MT_IMS
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miriam_annotations: ''
name: ubiquinone
name_for_plots: ''
position_x: .nan
position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
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structure_formula: ''
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type: ''
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- __id: 60
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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miriam_annotations: ''
name: ubiquinol
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position_y: .nan
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reference_name: ''
reference_pub_med: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 61
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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identifiers_obo_chebi: ''
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location: MT_IMS
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miriam_annotations: ''
name: ferrocytochrome c
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reference_name: ''
reference_pub_med: ''
regulator_role: ''
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s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
- __id: 62
__type: Compound
charge: 0.0
comment: ''
compound_sum_formula: ''
description: ''
enzyme_role: ''
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i_d: Cytc2p
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location: MT_IMS
mass: .nan
miriam_annotations: ''
name: ferricytochrome c
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position_y: .nan
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator_role: ''
s_b_m_l_fbc_charge: .nan
s_b_m_l_fbc_chemical_formula: ''
s_b_m_l_species_id: ''
s_b_m_l_speciestype_id: ''
s_b_o_term: ''
state: ''
structure_formula: ''
symbol: ''
type: ''
unit: ''
Definition: []
Enzyme: []
FbcObjective: []
Gene: []
Layout: []
Measurement: []
PbConfig:
- __id: 63
__type: PbConfig
option: use_pseudo_values
value: 'TRUE'
- __id: 64
__type: PbConfig
option: ph
value: '7'
- __id: 65
__type: PbConfig
option: temperature
value: '298.15'
- __id: 66
__type: PbConfig
option: overwrite_kinetics
value: 'TRUE'
- __id: 67
__type: PbConfig
option: cell_volume
value: '43'
- __id: 68
__type: PbConfig
option: parametrisation
value: hal
- __id: 69
__type: PbConfig
option: enzyme_prefactor
value: 'TRUE'
- __id: 70
__type: PbConfig
option: default_inhibition
value: complete
- __id: 71
__type: PbConfig
option: default_activation
value: complete
- __id: 72
__type: PbConfig
option: model_name
value: outputname
- __id: 73
__type: PbConfig
option: boundary_values
value: ignore
Position: []
Protein: []
Quantity:
- __id: 74
__type: Quantity
abbreviation: scp
biological_element: Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 10.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: -3000.0
mathematical_type: Additive
matrix_info: '[I_species, 0, 0, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
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position_x: .nan
position_y: .nan
prior_geometric_std: .nan
prior_median: -880.0
prior_std: 1500.0
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: standard chemical potential
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: 'Global parameter '
s_b_m_l_parameter_id: ''
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s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: mu0
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: kJ/mol
upper_bound: 2000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 75
__type: Quantity
abbreviation: kcrg
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 100.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
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i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-07
mathematical_type: Multiplicative
matrix_info: '[0, I_reaction, 0, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
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parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 10.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: catalytic rate constant geometric mean
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
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s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: KV
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: 1/s
upper_bound: 10000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 76
__type: Quantity
abbreviation: kmc
biological_element: Reaction/Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-06
mathematical_type: Multiplicative
matrix_info: '[0, 0, I_KM, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 10.0
prior_median: 0.1
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: Michaelis constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: KM
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 1000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 77
__type: Quantity
abbreviation: kac
biological_element: Reaction/Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 0.0001
mathematical_type: Multiplicative
matrix_info: '[0, 0, 0, I_KA, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 10.0
prior_median: 0.1
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: activation constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: KA
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 100.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 78
__type: Quantity
abbreviation: kic
biological_element: Reaction/Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 0.0001
mathematical_type: Multiplicative
matrix_info: '[0, 0, 0, 0, I_KI, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 10.0
prior_median: 0.1
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: inhibitory constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: KI
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 100.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 79
__type: Quantity
abbreviation: c
biological_element: Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-06
mathematical_type: Multiplicative
matrix_info: '[0, 0, 0, 0, 0, I_species, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 10.0
prior_median: 0.1
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: concentration
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Species (conc.)
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: c
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 1000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 80
__type: Quantity
abbreviation: eco
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 0.05
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-06
mathematical_type: Multiplicative
matrix_info: '[0, 0, 0, 0, 0, 0, I_reaction, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 0.001
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: concentration of enzyme
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: u
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 0.5
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 81
__type: Quantity
abbreviation: ph
biological_element: None
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Basic
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 0.0
mathematical_type: Additive
matrix_info: '[0, 0, 0, 0, 0, 0, 0, 1]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: .nan
prior_median: 7.0
prior_std: 1.0
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: pH
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Global parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: pH
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: dimensionless
upper_bound: 14.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 82
__type: Quantity
abbreviation: dscp
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 10.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: -1000.0
mathematical_type: Additive
matrix_info: '[Nt, 0, 0, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Thermodynamic
position_x: .nan
position_y: .nan
prior_geometric_std: .nan
prior_median: 0.0
prior_std: 1500.0
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: standard Gibbs energy of reaction
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: 'Global parameter '
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: dmu0
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: kJ/mol
upper_bound: 1000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 83
__type: Quantity
abbreviation: keq
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 100.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-10
mathematical_type: Multiplicative
matrix_info: '[[-1/RT * Nt], 0, 0, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Thermodynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: equilibrium constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: Keq
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: dimensionless
upper_bound: 100000000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 84
__type: Quantity
abbreviation: kcrf
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 100.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 0.01
mathematical_type: Multiplicative
matrix_info: '[[-0.5/RT * Nt], I_reaction, [-0.5 * Nkm], 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 10.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: substrate catalytic rate constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: 'Local parameter '
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: Kcatf
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: 1/s
upper_bound: 10000000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 85
__type: Quantity
abbreviation: kcrr
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 100.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-09
mathematical_type: Multiplicative
matrix_info: '[[0.5/RT * Nt], I_reaction, [0.5 * Nkm], 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 10.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: product catalytic rate constant
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: 'Local parameter '
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: Kcatr
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: 1/s
upper_bound: 10000000.0
use_as_prior_information: true
value: .nan
value_type: ''
- __id: 86
__type: Quantity
abbreviation: cp
biological_element: Species
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 20.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: -3000.0
mathematical_type: Additive
matrix_info: '[I_species, 0, 0, 0, 0, [RT * I_species], 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: .nan
prior_median: -880.0
prior_std: 1500.0
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: chemical potential
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: mu
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: kJ/mol
upper_bound: 2000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 87
__type: Quantity
abbreviation: raf
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 10.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: -60.0
mathematical_type: Additive
matrix_info: '[[-1 * Nt], 0, 0, 0, 0, [-RT * Nt], 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: .nan
prior_median: 0.0
prior_std: 10.0
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: reaction affinity
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: A
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: kJ/mol
upper_bound: 60.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 88
__type: Quantity
abbreviation: vmaf
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 0.1
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-08
mathematical_type: Multiplicative
matrix_info: '[[-0.5/RT * Nt], I_reaction, [-0.5 * Nkm], 0, 0, 0, I_reaction, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 0.01
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: forward maximal velocity
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: Vmaxf
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM/s
upper_bound: 1000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 89
__type: Quantity
abbreviation: vmar
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 0.1
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-08
mathematical_type: Multiplicative
matrix_info: '[[0.5/RT * Nt], I_reaction, [0.5 * Nkm], 0, 0, 0, I_reaction, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 100.0
prior_median: 0.01
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: reverse maximal velocity
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: Vmaxr
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM/s
upper_bound: 1000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 90
__type: Quantity
abbreviation: thtf
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-07
mathematical_type: Multiplicative
matrix_info: '[[-1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h *
Nft, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 1000.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: forward mass action term
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: thetaf
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: 1/s
upper_bound: 10000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 91
__type: Quantity
abbreviation: thtr
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-07
mathematical_type: Multiplicative
matrix_info: '[[ 1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h *
Nrt, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 1000.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: reverse mass action term
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: thetar
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: 1/s
upper_bound: 10000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 92
__type: Quantity
abbreviation: tauf
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-07
mathematical_type: Multiplicative
matrix_info: '[[-1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h *
Nft, I_reaction, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 1000.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: forward enzyme mass action term
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: tauf
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM/s
upper_bound: 10000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 93
__type: Quantity
abbreviation: taur
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 1.0e-07
mathematical_type: Multiplicative
matrix_info: '[[ 1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h *
Nrt, I_reaction, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Dynamic
position_x: .nan
position_y: .nan
prior_geometric_std: 1000.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: reverse enzyme mass action term
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: ''
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: taur
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM/s
upper_bound: 10000000.0
use_as_prior_information: false
value: .nan
value_type: ''
- __id: 94
__type: Quantity
abbreviation: kmprod
biological_element: Reaction
comment: ''
compound: ''
compound_identifiers_kegg_compound: ''
compound_s_b_m_l_species_id: ''
concentration_max: .nan
concentration_min: .nan
condition: ''
data_geometric_std: .nan
data_std: 1.0
dependence: Derived
description: ''
enyzme: ''
enyzme_s_b_m_l_parameter_id: ''
enyzme_s_b_m_l_species_id: ''
gene: ''
geometric_mean: .nan
i_d: ''
identifiers: ''
identifiers_kegg_compound: ''
identifiers_kegg_reaction: ''
identifiers_obo_chebi: ''
location: ''
location_s_b_m_l_compartment_id: ''
lower_bound: 0.001
mathematical_type: Multiplicative
matrix_info: '[0, 0, Nkm, 0, 0, 0, 0, 0]'
max: .nan
mean: .nan
median: .nan
min: .nan
miriam_annotations: ''
name: ''
organism: ''
p_h: .nan
parameter_s_b_m_l_parameter_id: ''
physical_type: Kinetic
position_x: .nan
position_y: .nan
prior_geometric_std: 1000.0
prior_median: 1.0
prior_std: .nan
prob_dist: ''
provenance: ''
quantity: ''
quantity_name: ''
quantity_type: Michaelis constant product
reaction: ''
reaction_identifiers_kegg_reaction: ''
reaction_s_b_m_l_reaction_id: ''
reference: ''
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
s_b_m_l_element: Local parameter
s_b_m_l_parameter_id: ''
s_b_o_concentration: .nan
s_b_o_concentration_m_m_log10_median: .nan
s_b_o_equilibrium_constant: .nan
s_b_o_identifiers_obo_sbo: ''
s_b_o_term: ''
scale: ''
sign: '0'
std: .nan
symbol: KMprod
temperature: .nan
time: .nan
time_point: ''
type: ''
unit: mM
upper_bound: 1000.0
use_as_prior_information: false
value: .nan
value_type: ''
QuantityInfo: []
QuantityMatrix: []
Reaction:
- __id: 95
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: GLCflow
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (Glc_F * pow(10, -3) - GLC) * flow
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ''
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ' <=> GLC'
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 96
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: LACflow
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * LAC * flow
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ''
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: LAC <=>
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 97
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: GAPflow
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * GAP * flow
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ''
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: GAP <=>
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 98
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v1
identifiers: ''
identifiers_ec_code: 2.7.1.2
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V1 * ATP_cyt * GLC / ((K1GLC + GLC) * (K1ATP + ATP_cyt)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: glucokinase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: GLC + ATP_cyt <=> F6P + ADP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 99
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v2
identifiers: ''
identifiers_ec_code: 2.7.1.11
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V2 * ATP_cyt * pow(F6P, 2) / ((K2 * (1 + k2 * pow(ATP_cyt
/ AMP, 2)) + pow(F6P, 2)) * (K2ATP + ATP_cyt)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: 6-phosphofructokinase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: F6P + ATP_cyt <=> FBP + ADP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: AMP
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 100
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v3
identifiers: ''
identifiers_ec_code: 4.1.2.13
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (k3f * FBP - k3b * pow(GAP, 2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: fructose-bisphosphate aldolase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: FBP <=> 2.0 GAP
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 101
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v4
identifiers: ''
identifiers_ec_code: 1.2.1.12
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V4 * NAD * GAP / ((K4GAP + GAP) * (K4NAD + NAD)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: glyceraldehyde 3-phosphate dehydrogenase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: GAP + NAD <=> DPG + NADH_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 102
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v5
identifiers: ''
identifiers_ec_code: 5.4.2.4
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (k5f * DPG * ADP_cyt - k5b * PEP * ATP_cyt)
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: bisphosphoglycerate phosphotase (1/2)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: DPG + ADP_cyt <=> PEP + ATP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 103
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v6
identifiers: ''
identifiers_ec_code: 2.7.1.40
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V6 * ADP_cyt * PEP / ((K6PEP + PEP) * (K6ADP + ADP_cyt)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: pyruvate kinase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: PEP + ADP_cyt <=> PYR_cyt + ATP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 104
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v7
identifiers: ''
identifiers_ec_code: 1.1.1.27
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (k8f * NADH_cyt * PYR_cyt - k8b * NAD * LAC)
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: lactate dehydrogenase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: PYR_cyt + NADH_cyt <=> LAC + NAD
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 105
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: hidden_1
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (k9f * AMP * ATP_cyt - k9b * pow(ADP_cyt, 2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ''
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: AMP + ATP_cyt <=> 2.0 ADP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 106
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v8
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (V * PYR_cyt * v8_PYC / (K + PYR_cyt))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: pyruvate carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: PYR_cyt <=> Pyr
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 107
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v9
identifiers: ''
identifiers_ec_code: 1.2.4.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MATRIX * (KcF * v9_PDC * Pyr * CoA * NAD_p / (KmC * Pyr * CoA + KmB
* Pyr * NAD_p + KmA * CoA * NAD_p + Pyr * CoA * NAD_p + KmA * KmP * Kib * Kic
/ KmR / Kip / Kiq * Acetyl_CoA * NADH + KmC / Kir * Pyr * CoA * NADH + KmB / Kiq
* Pyr * NAD_p * Acetyl_CoA + KmA * KmP * Kib * Kic / KmR / Kip / Kia / Kiq * Pyr
* Acetyl_CoA * NADH))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: pyruvate dehydrogenase complex
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Pyr + CoA + NAD_p <=> CO2 + Acetyl_CoA + NADH
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 108
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v10
identifiers: ''
identifiers_ec_code: 2.3.3.3
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (V * Acetyl_CoA * OXA * v10_CS / (Acetyl_CoA * OXA + Ka *
OXA + Kb * Acetyl_CoA + Kia * Kib))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: citrate synthase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: OXA + Acetyl_CoA <=> Cit + CoA
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 109
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v11
identifiers: ''
identifiers_ec_code: 4.2.1.3
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((KcF * Kp * Cit - KcR * Ks * IsoCit) * v11_ACO / (Ks * IsoCit
+ Kp * Cit + Ks * Kp))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: aconitase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Cit <=> IsoCit
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 110
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v12
identifiers: ''
identifiers_ec_code: 1.1.1.41
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MATRIX * (KcF * v12_IDHa * (IsoCit * IsoCit + b * ADP * IsoCit) / (IsoCit
* IsoCit + c * IsoCit + d * ADP + e * ADP * IsoCit + f))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: isocitrate dehydrogenase (NAD+) (alpha/beta/gamma)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: IsoCit + NAD_p <=> OG + NADH
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ADP
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 111
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v14
identifiers: ''
identifiers_ec_code: 1.2.4.2
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MATRIX * (KcF * v14_OGDC * OG * CoA * NAD_p / (KmC * OG * CoA + KmB
* OG * NAD_p + KmA * CoA * NAD_p + OG * CoA * NAD_p + KmA * KmP * Kib * Kic /
KmR / Kip / Kiq * SCoA * NADH + KmC / Kir * OG * CoA * NADH + KmB / Kiq * OG *
NAD_p * SCoA + KmA * KmP * Kib * Kic / KmR / Kip / Kia / Kiq * OG * SCoA * NADH))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: oxoglutarate dehydrogenase complex
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: OG + CoA + NAD_p <=> CO2 + SCoA + NADH
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 112
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v15
identifiers: ''
identifiers_ec_code: 6.2.1.4
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((GDP * SCoA * pi - Suc * GTP * CoA / Keq) * (Kc1 * v15_SCS
+ Kc2 * v15_SCS * (KmC * Suc / KmC2 * Kip + pi / KmC2)) / (Kia * KmB * pi + KmB
* GDP * pi + KmA * SCoA * pi + KmC * GDP * SCoA + GDP * SCoA * pi + GDP * SCoA
* pi * pi / KmC2 + Kia * KmB * KmC * Suc / Kip + Kia * KmB * KmC * Suc * GTP /
Kip / Kiq + Kia * KmB * KmC * Suc * CoA / Kip / Kir + Kia * KmB * Kic * GTP *
CoA / KmQ / Kir + Kia * KmB * KmC * Suc * GTP * CoA / Kip / KmQ / Kir + Kia *
KmB * KmC * Suc * Suc * GTP * CoA / Kip / KmP2 / KmQ / Kir + Kia * KmB * pi *
GTP / Kiq + Kia * KmB * pi * CoA / Kir + Kia * KmB * pi * GTP * CoA / KmQ / Kir
+ Kia * KmB * pi * Suc * GTP * CoA / KmP2 / KmQ / Kir + KmB * KmC * GDP * Suc
/ Kip + KmA * KmC * SCoA * Suc / Kip + KmC * GDP * SCoA * Suc / Kip + KmC * GDP
* SCoA * pi * Suc / KmC2 / Kip + KmA * SCoA * pi * GTP / Kiq + KmB * GDP * pi
* CoA / Kir + KmA * KmC * SCoA * Suc * GTP / Kip / Kiq + KmB * KmC * GDP * Suc
* CoA / Kip / Kir))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: succinyl-CoA synthetase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: GDP + SCoA + Pi <=> Suc + GTP + CoA
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 113
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v16
identifiers: ''
identifiers_ec_code: 1.3.5.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v16_SDH * (Suc * Q - Fum * QH2 / Keq) / (KcR
* KmS2 * Suc + KcR * KmS1 * Q + KcF * KmP2 * Fum / Keq + KcF * KmP1 * QH2 / Keq
+ KcR * Suc * Q + KcF * KmP2 * Suc * Fum / (Keq * KiS1) + KcF * Fum * QH2 / Keq
+ KcR * KmS1 * Q * QH2 / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: succinate dehydrogenase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Suc + Q <=> Fum + QH2
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 114
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v17
identifiers: ''
identifiers_ec_code: 4.2.1.2
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((KcF * Kp * Fum - KcR * Ks * Mal) * v17_FM / (Ks * Mal +
Kp * Fum + Ks * Kp))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: fumarase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Fum <=> Mal
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 115
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v18
identifiers: ''
identifiers_ec_code: 1.1.1.37
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((KcF * Mal * NAD_p / KiS1 / KmS2 - KcR * OXA * NADH / KmP1
/ KiP2) * v18_MDH / (1 + Mal / KiS1 + KmS1 * NAD_p / KiS1 / KmS2 + KmP2 * OXA
/ KmP1 / KiP2 + NADH / KiP2 + Mal * NAD_p / KiS1 / KmS2 + KmP2 * Mal * OXA / KiS1
/ KmP1 / KiP2 + KmS1 * NAD_p * NADH / KiS1 / KmS2 / KiP2 + OXA * NADH / KmP1 *
KiP2 + Mal * NAD_p * OXA / KiS1 / KmS2 / KiP1 + NAD_p * OXA * NADH / KiS2 / KmP1
/ KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: malate dehydrogenase (mitochondrion)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Mal + NAD_p <=> NADH + OXA
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 116
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v20
identifiers: ''
identifiers_ec_code: 2.6.1.2
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v20_AlaTA * (Ala * OG - Glu * Pyr / Keq) / (KcR
* KmS2 * Ala + KcR * KmS1 * OG + KcF * KmP2 * Glu / Keq + KcF * KmP1 * Pyr / Keq
+ KcR * Ala * OG + KcF * KmP2 * Ala * Glu / (Keq * KiS1) + KcF * Glu * Pyr / Keq
+ KcR * KmS1 * OG * Pyr / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: alanine transaminase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Ala + OG <=> Glu + Pyr
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 117
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v21
identifiers: ''
identifiers_ec_code: 2.6.1.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v21_AspTA * (OXA * Glu - Asp * OG / Keq) / (KcR
* KmS2 * OXA + KcR * KmS1 * Glu + KcF * KmP2 * Asp / Keq + KcF * KmP1 * OG / Keq
+ KcR * OXA * Glu + KcF * KmP2 * OXA * Asp / (Keq * KiS1) + KcF * Asp * OG / Keq
+ KcR * KmS1 * Glu * OG / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: aspartate transaminase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: OXA + Glu <=> Asp + OG
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 118
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v22
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((Asp * Glu_cyt / alpha / KiS1 / KiS2 * KcF - Glu * Asp_cyt
/ beta / KiP1 / KiP2 * KcR) * v22_AGC / (1 + Asp / KiS1 + Glu_cyt / KiS2 + Glu
/ KiP1 + Asp_cyt / KiP2 + Asp * Glu_cyt / alpha / KiS1 / KiS2 + Glu * Asp_cyt
/ beta / KiP1 / KiP2 + Glu_cyt * Asp_cyt / gamma / KiS2 / KiP2 + Asp * Glu / delta
/ KiS1 / KiP1))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: aspartate/glutamate carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Glu_cyt + Asp <=> Asp_cyt + Glu
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 119
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v24
identifiers: ''
identifiers_ec_code: 2.7.4.6
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v24_Complex_I * (NADH * Q - NAD_p * QH2 / Keq)
/ (KcR * KmS2 * NADH + KcR * KmS1 * Q + KcF * KmP2 * NAD_p / Keq + KcF * KmP1
* QH2 / Keq + KcR * NADH * Q + KcF * KmP2 * NADH * NAD_p / (Keq * KiS1) + KcF
* NAD_p * QH2 / Keq + KcR * KmS1 * Q * QH2 / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: NADH:ubiquinone oxidoreductase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: NADH + Q <=> NAD_p + QH2
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 120
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v25
identifiers: ''
identifiers_ec_code: 1.10.2.2
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MT_IMS * (KcF * v25_Complex_III * QH2 * Cytc3p / ((KmA * Kq2 * Kb2
+ KmA * Kq2 * Cytc3p + KcF / k8 * Kq1 * QH2 * Kb1 + KcF / k8 * Kq1 * QH2 * Cytc3p)
* Cytc2p + KmA * Cytc3p + KmB * QH2 + QH2 * Cytc3p))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ubiquinol:cytochrome c oxidoreductase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: QH2 + 2.0 Cytc3p <=> Q + 2.0 Cytc2p
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 121
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v26
identifiers: ''
identifiers_ec_code: 1.9.3.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MT_IMS * (KcF * v26_Complex_IV * Cytc2p / (Ks + Cytc2p))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: cytochrome c oxidase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Cytc2p <=> Cytc3p
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 122
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v27
identifiers: ''
identifiers_ec_code: 2.3.3.3
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * Kid * Kc * (V * Acetyl_CoA_cyt * OXA_cyt * v10_CS / (Acetyl_CoA_cyt
* OXA_cyt + Ka * OXA_cyt + Kb * Acetyl_CoA_cyt + Kia * Kib)) / (Keq * Kia * Kb)
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: citrate synthase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Cit_cyt + CoA_cyt <=> OXA_cyt + Acetyl_CoA_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 123
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v28
identifiers: ''
identifiers_ec_code: 3.6.1.5
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * v28_Complex_V * V * ADP / (Km + ADP + ADP * ADP / Ki)
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ATPase complex
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ADP + Pi <=> ATP + H2O
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 124
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v29
identifiers: ''
identifiers_ec_code: 4.2.1.3
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * ((KcF * Kp * Cit_cyt - KcR * Ks * IsoCitcyt) * v29_ACO
/ (Ks * IsoCitcyt + Kp * Cit_cyt + Ks * Kp))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: aconitase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Cit_cyt <=> IsoCitcyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 125
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v30
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((OG * Mal_cyt / alpha / KiS1 / KiS2 * KcF - Mal * OG_cyt
/ beta / KiP1 / KiP2 * KcR) * v30_OGC / (1 + OG / KiS1 + Mal_cyt / KiS2 + Mal
/ KiP1 + OG_cyt / KiP2 + OG * Mal_cyt / alpha / KiS1 / KiS2 + Mal * OG_cyt / beta
/ KiP1 / KiP2 + Mal_cyt * OG_cyt / gamma / KiS2 / KiP2 + OG * Mal / delta / KiS1
/ KiP1))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: oxoglutarate carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Mal_cyt + OG <=> OG_cyt + Mal
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 126
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v31
identifiers: ''
identifiers_ec_code: 1.1.1.37
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (v31_MDH * (k1 * k2 * k3 * k4 * NADH_cyt * OXA_cyt - kminus1
* kminus2 * kminus3 * kminus4 * Mal_cyt * NAD) / (kminus1 * (kminus2 + k3) * k4
+ k1 * (kminus2 + k3) * k4 * NADH_cyt + kminus1 * (kminus2 + k3) * kminus4 * NAD
+ k2 * k3 * k4 * OXA_cyt + kminus1 * kminus2 * kminus3 * Mal_cyt + k1 * k2 * (k3
+ k4) * NADH_cyt * OXA_cyt + (kminus1 + kminus2) * kminus3 * kminus4 * Mal_cyt
* NAD + k1 + kminus2 + kminus3 * NADH_cyt * Mal_cyt + k1 * k2 * kminus3 * NADH_cyt
* OXA_cyt * Mal_cyt + k2 * k3 * kminus4 * OXA_cyt * NAD + k2 * kminus3 * kminus4
* OXA_cyt * Mal_cyt * NAD))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: malate dehydrogenase (cytosol)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: NADH_cyt + OXA_cyt <=> Mal_cyt + NAD
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 127
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v32
identifiers: ''
identifiers_ec_code: 2.6.1.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (KcF * KcR * v32_AspTA * (Asp_cyt * OG_cyt - OXA_cyt *
Glu_cyt / Keq) / (KcR * KmS2 * Asp_cyt + KcR * KmS1 * OG_cyt + KcF * KmP2 * OXA_cyt
/ Keq + KcF * KmP1 * Glu_cyt / Keq + KcR * Asp_cyt * OG_cyt + KcF * KmP2 * Asp_cyt
* OXA_cyt / (Keq * KiS1) + KcF * OXA_cyt * Glu_cyt / Keq + KcR * KmS1 * OG_cyt
* Glu_cyt / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: aspartate transaminase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Asp_cyt + OG_cyt <=> OXA_cyt + Glu_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 128
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v33
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((Cit_cyt * Mal / alpha / KiS1 / KiS2 * KcF - Mal_cyt * Cit
/ beta / KiP1 / KiP2 * KcR) * v33_CIC / (1 + Cit_cyt / KiS1 + Mal / KiS2 + Mal_cyt
/ KiP1 + Cit / KiP2 + Cit_cyt * Mal / alpha / KiS1 / KiS2 + Mal_cyt * Cit / beta
/ KiP1 / KiP2 + Mal * Cit / gamma / KiS2 / KiP2 + Cit_cyt * Mal_cyt / delta /
KiS1 / KiP1))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: citrate carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Cit_cyt + Mal <=> Mal_cyt + Cit
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 129
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v34
identifiers: ''
identifiers_ec_code: 1.5.5.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v34_ETF_QO * (ETFred * Q - ETFox * QH2 / Keq)
/ (KcR * KmS2 * ETFred + KcR * KmS1 * Q + KcF * KmP2 * ETFox / Keq + KcF * KmP1
* QH2 / Keq + KcR * ETFred * Q + KcF * KmP2 * ETFred * ETFox / (Keq * KiS1) +
KcF * ETFox * QH2 / Keq + KcR * KmS1 * Q * QH2 / KiP2))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ETF:Q oxidoreductase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ETFred + Q <=> ETFox + QH2
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 130
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v35
identifiers: ''
identifiers_ec_code: 1.8.1.7
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v35_ACD * (FADH2 * ETFox - ETFred * FAD / Keq)
/ (KcR * KiS1 * KmS2 + KcR * KmS2 * FADH2 + KcR * KmS1 * ETFox + KcF * KmP2 *
ETFred / Keq + KcF * KmP1 * FAD / Keq + KcR * FADH2 * ETFox + KcF * KmP2 * FADH2
* ETFred / (Keq * KiS1) + KcF * ETFred * FAD / Keq + KcR * KmS1 * ETFox * FAD
/ KiP2 + KcR * FADH2 * ETFox * ETFred / KiP1 + KcF * ETFox * ETFred * FAD / (KiS2
* Keq)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: glutathione reductase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: FADH2 + ETFox <=> ETFred + FAD
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 131
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v36
identifiers: ''
identifiers_ec_code: 6.4.1.1
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (KcF * KcR * v36_PC * (ATP * CO2 * Pyr - pi * ADP * OXA /
Keq) / (Kia * KmB * KcR * Pyr + KmC * KcR * ATP * CO2 + KmA * KcR * CO2 * Pyr
+ KmB * KcR * ATP * Pyr + KcR * ATP * CO2 * Pyr + Kip * KmQ * KcF * OXA / Keq
+ KmQ * KcF * pi * OXA / Keq + KmP * KcF * ADP * OXA / Keq + KmR * KcF * pi *
ADP / Keq + KcF * pi * ADP * OXA / Keq + Kia * KmB * KcR * Pyr * pi / Kip + Kia
* KmB * KcR * Pyr * ADP / Kia + Kiq * KmP * KcF * CO2 * OXA / Kib / Keq + Kia
* KmP * KcF * ATP * OXA / Kia / Keq + KmA * KcR * ATP * CO2 * OXA / Kir + KmR
* KcF * Pyr * pi * ADP / Kic / Keq + KmA * KcR * CO2 * Pyr * ADP / Kiq + KmA *
KcR * CO2 * Pyr * pi / Kip + KmP * KcF * CO2 * ADP * OXA / Kib / Keq + KmQ * KcF
* CO2 * pi * OXA / Kib / Keq))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: pyruvate decarboxylase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ATP + CO2 + Pyr <=> Pi + ADP + OXA
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 132
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v37
identifiers: ''
identifiers_ec_code: 1.1.99.5
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V * v37_GUT2P * G3P / (K + G3P))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: glycerol-3-phosphate dehydrogenase (FAD dependent)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: G3P + FAD <=> FADH2 + DHAP
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 133
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v38
identifiers: ''
identifiers_ec_code: 1.1.1.8
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: CYTOPLASM * (V * v38_GUT2P * NADH_cyt / (K + NADH_cyt))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: glycerol-3-phosphate dehydrogenase (NAD+ dependent)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: NADH_cyt + DHAP <=> G3P + NAD
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 134
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v40
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MATRIX * (V * v40_AAC * ADP_cyt / (K + ADP_cyt))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ATP/ADP carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ADP_cyt <=> ADP
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 135
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v41
identifiers: ''
identifiers_ec_code: 1.1.1.42
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * v41_IDHc * (IsoCitcyt * NADP_cyt / (phi0 * IsoCitcyt *
NADP_cyt + phi1 * NADP_cyt + phi2 * IsoCitcyt + phi12) - OG_cyt * NADPH_cyt *
CO2 / (phir0 * OG_cyt * NADPH_cyt * CO2 + phir1 * NADPH_cyt * CO2 + phir2 * OG_cyt
* CO2 + phir3 * OG_cyt * NADPH_cyt + phir12 * CO2 + phir13 * NADPH_cyt + phir23
* OG_cyt + phir123))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: cytosolic isocitrate dehydrogenase
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: IsoCitcyt + NADP_cyt <=> OG_cyt + NADPH_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: CO2
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 136
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v42
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * ((IsoCitcyt * Mal / alpha / KiS1 / KiS2 * KcF - Mal_cyt *
IsoCit / beta / KiP1 / KiP2 * KcR) * v42_CIC / (1 + IsoCitcyt / KiS1 + Mal / KiS2
+ Mal_cyt / KiP1 + IsoCit / KiP2 + IsoCitcyt * Mal / alpha / KiS1 / KiS2 + Mal_cyt
* IsoCit / beta / KiP1 / KiP2 + Mal * IsoCit / gamma / KiS2 / KiP2 + IsoCitcyt
* Mal_cyt / delta / KiS1 / KiP1))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: citrate carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: IsoCitcyt + Mal <=> Mal_cyt + IsoCit
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 137
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v43
identifiers: ''
identifiers_ec_code: ''
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: false
kinetic_law: MATRIX * (V * v43_AAC * ATP / (K + ATP))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: ATP/ADP carrier
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: ATP <=> ATP_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 138
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v39
identifiers: ''
identifiers_ec_code: 1.1.1.40
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: CYTOPLASM * (v39_MDH * Kcat * Mal_cyt * NADP_cyt / ((Kmal + Mal_cyt)
* (Knadp + NADP_cyt)))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Mal_cyt + NADP_cyt <=> NADPH_cyt + PYR_cyt
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
- __id: 139
__type: Reaction
build_enzyme: false
build_enzyme_production: false
build_reaction: false
comment: ''
description: ''
enzyme: ''
enzyme_s_b_m_l_parameter_id: ''
enzyme_s_b_m_l_species_id: ''
flux: .nan
gene: ''
gene_symbol: ''
i_d: v44
identifiers: ''
identifiers_ec_code: 1.1.1.40
identifiers_kegg_reaction: ''
identifiers_obo_sbo: ''
is_complete: false
is_exchange_reaction: false
is_in_equilibrium: false
is_non_enzymatic: false
is_reversible: true
kinetic_law: MATRIX * (v44_MDH * Kcat * Mal / (Km + Mal))
kinetic_law_formula: ''
kinetic_law_name: ''
location: ''
miriam_annotations: ''
model: ''
modifier: ''
name: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
name_for_plots: ''
operon: ''
pathway: ''
position_x: .nan
position_y: .nan
reaction_formula: Mal + NADP_p <=> NADPH + Pyr
reference_d_o_i: ''
reference_name: ''
reference_pub_med: ''
regulator: ''
s_b_m_l_fbc_gene_association: ''
s_b_m_l_fbc_lower_bound: ''
s_b_m_l_fbc_upper_bound: ''
s_b_m_l_reaction_id: ''
s_b_o_term: ''
subreaction_of: ''
symbol: ''
type: ''
ReactionStoichiometry: []
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Relation: []
Relationship: []
SparseMatrix: []
SparseMatrixColumn: []
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SparseMatrixRow: []
StoichiometricMatrix: []
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