KarrLab/obj_tables

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examples/sbtab/simple_examples/3.json

Summary

Maintainability
Test Coverage
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"gene_symbol": "", "i_d": "glycolysis", "identifiers": "", "identifiers_ec_code": "", "identifiers_kegg_reaction": "", "identifiers_obo_sbo": "", "is_complete": false, "is_exchange_reaction": false, "is_in_equilibrium": false, "is_non_enzymatic": false, "is_reversible": false, "kinetic_law": "", "kinetic_law_formula": "", "kinetic_law_name": "", "location": "", "miriam_annotations": "", "model": "", "modifier": "", "name": "Glycolysis", "name_for_plots": "", "operon": "", "pathway": "", "position_x": NaN, "position_y": NaN, "reaction_formula": "Glc + 2 ATP + 4 ADP + 2 Pi + 2 NAD <=> 2 Pyr + 4 ATP + 2 ADP + NADH", "reference_d_o_i": "", "reference_name": "", "reference_pub_med": "", "regulator": "", "s_b_m_l_fbc_gene_association": "", "s_b_m_l_fbc_lower_bound": "", "s_b_m_l_fbc_upper_bound": "", "s_b_m_l_reaction_id": "", "s_b_o_term": "", "subreaction_of": "", "symbol": "", "type": ""}], "ReactionStoichiometry": [], "Regulator": [], "Relation": [], "Relationship": [], "SparseMatrix": [], "SparseMatrixColumn": [], "SparseMatrixOrdered": [], "SparseMatrixRow": [], "StoichiometricMatrix": [], "rxnconContingencyList": [], "rxnconReactionList": [], "_documentMetadata": {"schema": "SBtab", "objTablesVersion": "1.0.5", "date": "2020-07-18 12:17:43"}, "_classMetadata": {"ReactionStoichiometry": {"class": "ReactionStoichiometry", "name": "ReactionStoichiometry"}, "SparseMatrixRow": {"class": "SparseMatrixRow", "name": "SparseMatrixRow"}, "FbcObjective": {"class": "FbcObjective", "name": "FbcObjective"}, "Definition": {"class": "Definition", "name": "Definition"}, "Compound": {"class": "Compound", "description": "Ex 8 - Compound", "name": "Compound"}, "SparseMatrixColumn": {"class": "SparseMatrixColumn", "name": "SparseMatrixColumn"}, "StoichiometricMatrix": {"class": "StoichiometricMatrix", "name": "StoichiometricMatrix"}, "QuantityMatrix": {"class": "QuantityMatrix", "description": "Ex 17 - Metabolomics", "name": "QuantityMatrix"}, "Layout": {"class": "Layout", "name": "Layout"}, "Relationship": {"class": "Relationship", "name": "Relationship"}, "Measurement": {"class": "Measurement", "name": "Measurement"}, "Quantity": {"class": "Quantity", "description": "Ex 12 - Quantity", "name": "Quantity"}, "rxnconReactionList": {"class": "rxnconReactionList", "name": "rxnconReactionList"}, "Position": {"class": "Position", "name": "Position"}, "Reaction": {"class": "Reaction", "description": "Ex 10 - Glycolysis", "name": "Reaction"}, "Regulator": {"class": "Regulator", "name": "Regulator"}, "Enzyme": {"class": "Enzyme", "name": "Enzyme"}, "Relation": {"class": "Relation", "name": "Relation"}, "PbConfig": {"class": "PbConfig", "name": "PbConfig"}, "Gene": {"class": "Gene", "name": "Gene"}, "Protein": {"class": "Protein", "name": "Protein"}, "Compartment": {"class": "Compartment", "name": "Compartment"}, "QuantityInfo": {"class": "QuantityInfo", "name": "QuantityInfo"}, "SparseMatrix": {"class": "SparseMatrix", "name": "SparseMatrix"}, "rxnconContingencyList": {"class": "rxnconContingencyList", "name": "rxnconContingencyList"}, "SparseMatrixOrdered": {"class": "SparseMatrixOrdered", "name": "SparseMatrixOrdered"}}}