examples/sbtab/teusink_model.tsv/Quantity.tsv
!!ObjTables schema='SBtab' type='Data' tableFormat='row' class='Quantity' name='Quantity' date='2020-07-18 12:18:29' objTablesVersion='1.0.5' document='BIOMD0000000064'
!Symbol !QuantityType !Sign !Unit !BiologicalElement !MathematicalType !PriorMedian !PriorStd !PriorGeometricStd !LowerBound !UpperBound !DataStd !PhysicalType !Dependence !UseAsPriorInformation !SBMLElement !Abbreviation !MatrixInfo
mu0 standard chemical potential 0 kJ/mol Species Additive -880.0 1500.0 -3000.0 2000.0 10.0 Thermodynamic Basic True Global parameter scp [I_species, 0, 0, 0, 0, 0, 0, 0]
KV catalytic rate constant geometric mean 0 1/s Reaction Multiplicative 10.0 100.0 1e-07 10000.0 100.0 Kinetic Basic True Local parameter kcrg [0, I_reaction, 0, 0, 0, 0, 0, 0]
KM Michaelis constant 0 mM Reaction/Species Multiplicative 0.1 10.0 1e-06 1000.0 1.0 Kinetic Basic True Local parameter kmc [0, 0, I_KM, 0, 0, 0, 0, 0]
KA activation constant 0 mM Reaction/Species Multiplicative 0.1 10.0 0.0001 100.0 1.0 Kinetic Basic True Local parameter kac [0, 0, 0, I_KA, 0, 0, 0, 0]
KI inhibitory constant 0 mM Reaction/Species Multiplicative 0.1 10.0 0.0001 100.0 1.0 Kinetic Basic True Local parameter kic [0, 0, 0, 0, I_KI, 0, 0, 0]
c concentration 0 mM Species Multiplicative 0.1 10.0 1e-06 1000.0 1.0 Dynamic Basic True Species (conc.) c [0, 0, 0, 0, 0, I_species, 0, 0]
u concentration of enzyme 0 mM Reaction Multiplicative 0.001 100.0 1e-06 0.5 0.05 Dynamic Basic True Local parameter eco [0, 0, 0, 0, 0, 0, I_reaction, 0]
pH pH 0 dimensionless None Additive 7.0 1.0 0.0 14.0 1.0 Dynamic Basic True Global parameter ph [0, 0, 0, 0, 0, 0, 0, 1]
dmu0 standard Gibbs energy of reaction 0 kJ/mol Reaction Additive 0.0 1500.0 -1000.0 1000.0 10.0 Thermodynamic Derived False Global parameter dscp [Nt, 0, 0, 0, 0, 0, 0, 0]
Keq equilibrium constant 0 dimensionless Reaction Multiplicative 1.0 100.0 1e-10 100000000.0 100.0 Thermodynamic Derived True Local parameter keq [[-1/RT * Nt], 0, 0, 0, 0, 0, 0, 0]
Kcatf substrate catalytic rate constant 0 1/s Reaction Multiplicative 10.0 100.0 0.01 10000000.0 100.0 Kinetic Derived True Local parameter kcrf [[-0.5/RT * Nt], I_reaction, [-0.5 * Nkm], 0, 0, 0, 0, 0]
Kcatr product catalytic rate constant 0 1/s Reaction Multiplicative 10.0 100.0 1e-09 10000000.0 100.0 Kinetic Derived True Local parameter kcrr [[0.5/RT * Nt], I_reaction, [0.5 * Nkm], 0, 0, 0, 0, 0]
mu chemical potential 0 kJ/mol Species Additive -880.0 1500.0 -3000.0 2000.0 20.0 Dynamic Derived False cp [I_species, 0, 0, 0, 0, [RT * I_species], 0, 0]
A reaction affinity 0 kJ/mol Reaction Additive 0.0 10.0 -60.0 60.0 10.0 Dynamic Derived False raf [[-1 * Nt], 0, 0, 0, 0, [-RT * Nt], 0, 0]
Vmaxf forward maximal velocity 0 mM/s Reaction Multiplicative 0.01 100.0 1e-08 1000000.0 0.1 Dynamic Derived False Local parameter vmaf [[-0.5/RT * Nt], I_reaction, [-0.5 * Nkm], 0, 0, 0, I_reaction, 0]
Vmaxr reverse maximal velocity 0 mM/s Reaction Multiplicative 0.01 100.0 1e-08 1000000.0 0.1 Dynamic Derived False Local parameter vmar [[0.5/RT * Nt], I_reaction, [0.5 * Nkm], 0, 0, 0, I_reaction, 0]
thetaf forward mass action term 0 1/s Reaction Multiplicative 1.0 1000.0 1e-07 10000000.0 1.0 Dynamic Derived False thtf [[-1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h * Nft, 0, 0]
thetar reverse mass action term 0 1/s Reaction Multiplicative 1.0 1000.0 1e-07 10000000.0 1.0 Dynamic Derived False thtr [[ 1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h * Nrt, 0, 0]
tauf forward enzyme mass action term 0 mM/s Reaction Multiplicative 1.0 1000.0 1e-07 10000000.0 1.0 Dynamic Derived False tauf [[-1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h * Nft, I_reaction, 0]
taur reverse enzyme mass action term 0 mM/s Reaction Multiplicative 1.0 1000.0 1e-07 10000000.0 1.0 Dynamic Derived False taur [[ 1/(2*RT) * h * Nt], I_reaction, - 1/2 * h * abs(Nkm), 0, 0, h * Nrt, I_reaction, 0]
KMprod Michaelis constant product 0 mM Reaction Multiplicative 1.0 1000.0 0.001 1000.0 1.0 Kinetic Derived False Local parameter kmprod [0, 0, Nkm, 0, 0, 0, 0, 0]