KarrLab/obj_tables

!!ObjTables type='Schema'                    
!Name    !Type    !Parent    !Format    !Verbose name    !Verbose name plural
Compartment    Class        row    Compartment    Compartments
id    Attribute    Compartment    String(primary=True, unique=True)        
name    Attribute    Compartment    String(none=True, default=None, default_cleaned_value=None)        
Metabolite    Class        row    Metabolite    Metabolites
id    Attribute    Metabolite    String(primary=True, unique=True)        
name    Attribute    Metabolite    String(none=True, default=None, default_cleaned_value=None)        
formula    Attribute    Metabolite    chem.ChemicalFormula        
Reaction    Class        row    Reaction    Reactions
id    Attribute    Reaction    String(primary=True, unique=True)        
id_iAF1260    Attribute    Reaction    String(none=True, default=None, default_cleaned_value=None)    Id (iAF1260 [Ref1])    
name    Attribute    Reaction    String(none=True, default=None, default_cleaned_value=None)        
equation    Attribute    Reaction    chem.ReactionEquation(species_cls='Metabolite', compartment_cls='Compartment')        
reversible    Attribute    Reaction    Boolean        
subsystem    Attribute    Reaction    String(none=True, default=None, default_cleaned_value=None)        
ec_number    Attribute    Reaction    Regex(pattern='\d+\.\d+\.\d+\.\d+', none=True, default=None, default_cleaned_value=None)    EC number    
lower_bound    Attribute    Reaction    Float        
upper_bound    Attribute    Reaction    Float        
flux_acetate    Attribute    Reaction    Float    Flux (Acetate media, mmol * gCDW^-1 * h^-1)    
flux_acetate_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Acetate media, mmol * gCDW^-1 * h^-1)    
flux_fructose    Attribute    Reaction    Float    Flux (Fructose media, mmol * gCDW^-1 * h^-1)    
flux_fructose_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Fructose media, mmol * gCDW^-1 * h^-1)    
flux_galactose    Attribute    Reaction    Float    Flux (Galactose media, mmol * gCDW^-1 * h^-1)    
flux_galactose_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Galactose media, mmol * gCDW^-1 * h^-1)    
flux_glucose    Attribute    Reaction    Float    Flux (Glucose media, mmol * gCDW^-1 * h^-1)    
flux_glucose_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Glucose media, mmol * gCDW^-1 * h^-1)    
flux_glycerol    Attribute    Reaction    Float    Flux (Glycerol media, mmol * gCDW^-1 * h^-1)    
flux_glycerol_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Glycerol media, mmol * gCDW^-1 * h^-1)    
flux_gluconate    Attribute    Reaction    Float    Flux (Gluconate media, mmol * gCDW^-1 * h^-1)    
flux_gluconate_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Gluconate media, mmol * gCDW^-1 * h^-1)    
flux_pyruvate    Attribute    Reaction    Float    Flux (Pyruvate media, mmol * gCDW^-1 * h^-1)    
flux_pyruvate_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Pyruvate media, mmol * gCDW^-1 * h^-1)    
flux_succinate    Attribute    Reaction    Float    Flux (Succinate media, mmol * gCDW^-1 * h^-1)    
flux_succinate_uncertainty    Attribute    Reaction    Float    Flux uncertainty (Succinate media, mmol * gCDW^-1 * h^-1)    
delta_g_acetate    Attribute    Reaction    Float    ΔG (Acetate, kJ * mol^-1)    
delta_g_acetate_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Acetate, kJ * mol^-1)    
delta_g_fructose    Attribute    Reaction    Float    ΔG (Fructose, kJ * mol^-1)    
delta_g_fructose_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Fructose, kJ * mol^-1)    
delta_g_galactose    Attribute    Reaction    Float    ΔG (Galactose, kJ * mol^-1)    
delta_g_galactose_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Galactose, kJ * mol^-1)    
delta_g_glucose    Attribute    Reaction    Float    ΔG (Glucose, kJ * mol^-1)    
delta_g_glucose_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Glucose, kJ * mol^-1)    
delta_g_glycerol    Attribute    Reaction    Float    ΔG (Glycerol, kJ * mol^-1)    
delta_g_glycerol_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Glycerol, kJ * mol^-1)    
delta_g_gluconate    Attribute    Reaction    Float    ΔG (Gluconate, kJ * mol^-1)    
delta_g_gluconate_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Gluconate, kJ * mol^-1)    
delta_g_pyruvate    Attribute    Reaction    Float    ΔG (Pyruvate, kJ * mol^-1)    
delta_g_pyruvate_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Pyruvate, kJ * mol^-1)    
delta_g_succinate    Attribute    Reaction    Float    ΔG (Succinate, kJ * mol^-1)    
delta_g_succinate_uncertainty    Attribute    Reaction    Float    ΔG uncertainty (Succinate, kJ * mol^-1)    
Reference    Class        row    Reference    References
id    Attribute    Reference    String(primary=True, unique=True)        
title    Attribute    Reference    LongString        
authors    Attribute    Reference    LongString        
journal    Attribute    Reference    String        
volume    Attribute    Reference    PositiveInteger        
issue    Attribute    Reference    PositiveInteger        
start_page    Attribute    Reference    PositiveInteger        
end_page    Attribute    Reference    PositiveInteger        
pubmed_id    Attribute    Reference    PositiveInteger    PubMed id