KarrLab/wc_kb

version: 2.1

parameters:
  upstream_repo_name:
    type: string
    default: ""
  upstream_build_num:
    type: integer
    default: 0

workflows:
  build:
    jobs:
      - build:
          context: karr_lab

jobs:
  build:
    working_directory: /root/project
    docker:
      - image: karrlab/wc_env_dependencies:latest
    steps:
      # Clone repository
      - checkout

      # Load packages from cache
      - restore_cache:
          keys:
            - v2-{{ arch }}-{{ .Branch }}-{{ checksum "/etc/docker-image-tag" }}-{{ checksum "requirements.txt" }}

      # Python 3 installation tasks
      - run:
          name: Install pkg_utils (Python 3)
          command: python3 -m pip install -U git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
      - run:
          name: Install karr_lab_build_utils (Python 3)
          command: |
            python3 -m pip install -U git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics
            python3 -m pip install -U git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all]
            python3 -m pip install -U git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils[all]
      - run:
          name: Install package configuration files including credentials
          command: karr_lab_build_utils3 download-install-package-config-files
      - run:
          name: Setup Python environment
          command: |
            if [[ -f .circleci/requirements.txt ]]; then
              while IFS="" read -r line || [ -n "$line" ]; do
                if [[ ! -z "$line" ]] && [[ ! "$line" =~ ^# ]]; then
                  python3 -m pip install -U "$line"
                fi
              done < .circleci/requirements.txt
            fi
      - run:
          name: Install package (Python 3)
          command: python3 -m pip install -U -e .[all]

      # Save packages to cache
      - save_cache:
          key: v2-{{ arch }}-{{ .Branch }}-{{ checksum "/etc/docker-image-tag" }}-{{ checksum "requirements.txt" }}
          paths:
            - /usr/local/lib/python3.7/site-packages

      # Test code
      - run:
          name: Test code
          environment:
            PYTHONFAULTHANDLER: 1
          command: |
            set +e

            karr_lab_build_utils3 run-tests --with-xunit --with-coverage
            TEST_EXIT_CODE_PY3=$?

            # Calculate exit code and save to file for reading by the next step
            if [[ $TEST_EXIT_CODE_PY3 -eq 0 ]]; then
              echo "0" > TEST_EXIT_CODE
              exit 0
            else
              echo "0" > TEST_EXIT_CODE
              exit 1
            fi

      # Generate reports, archive results, and send notifications
      - run:
          name: Generate reports, archive results, and send notifications
          when: always
          environment:
            UPSTREAM_REPONAME: << pipeline.parameters.upstream_repo_name >>
            UPSTREAM_BUILD_NUM: << pipeline.parameters.upstream_build_num >>
          command: |
            if [[ -f TEST_EXIT_CODE ]]; then
              INSTALLATION_EXIT_CODE=0
              TEST_EXIT_CODE=$(<TEST_EXIT_CODE)
            else
              INSTALLATION_EXIT_CODE=1
              TEST_EXIT_CODE=1
            fi

            karr_lab_build_utils3 do-post-test-tasks $INSTALLATION_EXIT_CODE $TEST_EXIT_CODE

      - store_test_results:
          path: /root/project/tests/reports
      - store_artifacts:
          path: /root/project/tests/reports
          destination: reports
      - store_artifacts:
          path: /root/.wc/log
          destination: log
      - store_artifacts:
          path: /root/project/docs/_build/html
          destination: docs