KarrLab/wc_lang

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Function _default has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def _default(self):
        args = self.app.pargs

        if args.compare_files:
            model1 = read_workbook(args.path_1)
Severity: Minor
Found in wc_lang/__main__.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function export_to_sbml has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def export_to_sbml(self, sbml_model):
        """ Add this compartment to a SBML model.

        Args:
            sbml_model (:obj:`libsbml.Model`): SBML model
Severity: Minor
Found in wc_lang/core.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function get has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def get(ids, species_iterator):
        """ Find some Species instances

        Args:
            ids (:obj:`Iterator` of `str`): an iterator over some species identifiers
Severity: Minor
Found in wc_lang/core.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function normalize_unit_kind has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    def normalize_unit_kind(cls, kind, to_sbml_base_units=True):
        """ Normalize unit kind for SBML

        Args:
            kind (:obj:`str`): unit kind
Severity: Minor
Found in wc_lang/sbml/util.py - About 25 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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