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Similar blocks of code found in 3 locations. Consider refactoring.
Open

            for factor in init_factors[rna_init_factors[rna_kb.id]]:
                factor_details = init_factor_functions[rna_init_factors[rna_kb.id]][','.join(factor)]
                expression_terms.append(factor_details['function'].id)
                for cl, dictionary in objects.items():
                    dictionary.update(factor_details['objects'][cl])
Severity: Major
Found in wc_model_gen/eukaryote/transcription.py and 2 other locations - About 1 day to fix
wc_model_gen/eukaryote/transcription.py on lines 1020..1026
wc_model_gen/eukaryote/transcription.py on lines 1028..1035

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 135.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

                if trna.species[0].compartment.id == 'm':
                    if codon in trna_grouping['m']: 
                        trna_grouping['m'][codon]['trna'].append(trna.id)
                        trna_grouping['m'][codon]['anticodon'].append(anticodon_prop[0])
                    else:
Severity: Major
Found in wc_model_gen/eukaryote/translation_translocation.py and 1 other location - About 1 day to fix
wc_model_gen/eukaryote/translation_translocation.py on lines 591..609

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 122.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

            for factor in elongation_factors:
                factor_details = el_factor_functions[translation_compartment.id][','.join(factor)]
                expression_terms.append(factor_details['function'].id)
                for cl, dictionary in objects.items():
                    dictionary.update(factor_details['objects'][cl])
Severity: Major
Found in wc_model_gen/eukaryote/translation_translocation.py and 2 other locations - About 7 hrs to fix
wc_model_gen/eukaryote/translation_translocation.py on lines 804..809
wc_model_gen/eukaryote/translation_translocation.py on lines 1041..1046

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 115.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

            for factor in initiation_factors:
                factor_details = init_factor_functions[translation_compartment.id][','.join(factor)]
                expression_terms.append(factor_details['function'].id)
                for cl, dictionary in objects.items():
                    dictionary.update(factor_details['objects'][cl])
Severity: Major
Found in wc_model_gen/eukaryote/translation_translocation.py and 2 other locations - About 7 hrs to fix
wc_model_gen/eukaryote/translation_translocation.py on lines 868..873
wc_model_gen/eukaryote/translation_translocation.py on lines 1041..1046

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 115.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                for factor in chaperones:
                    factor_details = trans_factor_functions[chaperone_compartment.id][','.join(factor)]
                    expression_terms.append(factor_details['function'].id)
                    for cl, dictionary in objects.items():
                        dictionary.update(factor_details['objects'][cl])
Severity: Major
Found in wc_model_gen/eukaryote/translation_translocation.py and 2 other locations - About 7 hrs to fix
wc_model_gen/eukaryote/translation_translocation.py on lines 804..809
wc_model_gen/eukaryote/translation_translocation.py on lines 868..873

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 115.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def calc_aa_transfer_rate(self):
        """ Calculates the rate of monophosphate transfer from the extracellular space """

        # Calculate # of new AA molecules needed = # of AA molecules tied up in prots at t=0
        avg_aa_per_prot = self.calc_aa_per_prot()
Severity: Major
Found in wc_model_gen/prokaryote/metabolism.py and 1 other location - About 7 hrs to fix
wc_model_gen/prokaryote/metabolism.py on lines 226..239

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 114.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def calc_mpp_transfer_rate(self):
        """ Calculates the rate of monophosphate transfer from the extracellular space """

        # Calculate # of new TPP molecules needed = # of TPP molecules tied up in RNAs at T=0
        avg_tpp_per_rna = self.calc_tpp_per_rna()
Severity: Major
Found in wc_model_gen/prokaryote/metabolism.py and 1 other location - About 7 hrs to fix
wc_model_gen/prokaryote/metabolism.py on lines 241..254

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 114.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Function determine_bounds has a Cognitive Complexity of 46 (exceeds 5 allowed). Consider refactoring.
Open

    def determine_bounds(self):
        """ Determine the minimum and maximum bounds for each reaction. The bounds will be
            scaled according to the provided scale factor.

        Returns:
Severity: Minor
Found in wc_model_gen/eukaryote/metabolism.py - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function determine_initial_concentration has a Cognitive Complexity of 45 (exceeds 5 allowed). Consider refactoring.
Open

    def determine_initial_concentration(self):
        """ Estimate the initial concentrations of complex species using the following steps: 

            1) For each complex species, calculate the maximum possible copy number by taking the minimum
               of the availability of each subunit, which is determined as the ratio of
Severity: Minor
Found in wc_model_gen/eukaryote/complexation.py - About 6 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function test_metabolite_production has a Cognitive Complexity of 45 (exceeds 5 allowed). Consider refactoring.
Open

def test_metabolite_production(submodel, reaction_bounds, pseudo_reactions=None, 
    test_producibles=None, test_recyclables=None):
    """ Test that an FBA metabolism submodel can produce each reactant component (producible) 
        and recycle each product component (recyclable) in each reaction in the objective 
        function individually. First, a source (sink) reaction is added for each reactant
Severity: Minor
Found in wc_model_gen/utils.py - About 6 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function gen_reactions has a Cognitive Complexity of 44 (exceeds 5 allowed). Consider refactoring.
Open

    def gen_reactions(self):
        """ Generate reactions associated with submodel """
        model = self.model
        cell = self.knowledge_base.cell
Severity: Minor
Found in wc_model_gen/eukaryote/protein_degradation.py - About 6 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def gen_rate_laws(self):
        """ Generate rate laws for the reactions in the submodel """
        model = self.model

        modifier = model.observables.get_one(id='rna_polymerase_obs')
Severity: Major
Found in wc_model_gen/prokaryote/transcription.py and 1 other location - About 6 hrs to fix
wc_model_gen/prokaryote/rna_degradation.py on lines 83..100

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 101.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def gen_rate_laws(self):
        """ Generate rate laws for the reactions in the submodel """

        model = self.model
Severity: Major
Found in wc_model_gen/prokaryote/rna_degradation.py and 1 other location - About 6 hrs to fix
wc_model_gen/prokaryote/transcription.py on lines 83..98

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 101.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

                for aa in protein_seq:
                    aa_id = amino_acid_id_conversion[aa]
                    if aa_id not in aa_content:
                        aa_content[aa_id] = 1
                        gvar.protein_aa_usage[mrna_kb.protein.id][aa] = 1
Severity: Major
Found in wc_model_gen/eukaryote/translation_translocation.py and 1 other location - About 6 hrs to fix
wc_model_gen/eukaryote/complexation.py on lines 197..204

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 100.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

                                        for aa in protein_seq:
                                            aa_id = amino_acid_id_conversion[aa]
                                            if aa_id not in aa_content:
                                                aa_content[aa_id] = 1
                                                gvar.protein_aa_usage[subunit.species_type.id][aa] = 1
Severity: Major
Found in wc_model_gen/eukaryote/complexation.py and 1 other location - About 6 hrs to fix
wc_model_gen/eukaryote/translation_translocation.py on lines 297..304

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 100.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Function gen_rate_laws has a Cognitive Complexity of 40 (exceeds 5 allowed). Consider refactoring.
Open

    def gen_rate_laws(self):
        """ Generate rate laws for the reactions in the submodel """
        model = self.model
        compartment_proteasomes = self.options['compartment_proteasomes']
Severity: Minor
Found in wc_model_gen/eukaryote/protein_degradation.py - About 6 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File complexation.py has 415 lines of code (exceeds 250 allowed). Consider refactoring.
Open

""" Generator for macromolecular complexation submodel for eukaryotes
:Author: Yin Hoon Chew <yinhoon.chew@mssm.edu>
:Date: 2019-08-02
:Copyright: 2019, Karr Lab
:License: MIT
Severity: Minor
Found in wc_model_gen/eukaryote/complexation.py - About 5 hrs to fix

    Function gen_reactions has a Cognitive Complexity of 39 (exceeds 5 allowed). Consider refactoring.
    Open

        def gen_reactions(self):
        """ Generate a lumped reaction that covers initiation, elongation and termination for each protein translated """
        model = self.model
        submodel = self.submodel
        cell = self.knowledge_base.cell
    Severity: Minor
    Found in wc_model_gen/prokaryote/translation.py - About 5 hrs to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

    Similar blocks of code found in 4 locations. Consider refactoring.
    Open

                for ribosome_kb in cell.observables.get_one(id='ribosome_obs').expression.species:
                ribosome_species_type_model = model.species_types.get_one(id=ribosome_kb.species_type.id)
                ribosome_model = ribosome_species_type_model.species.get_one(compartment=cytosol)

                reaction.participants.add(ribosome_model.species_coefficients.get_or_create(coefficient=-1))
    Severity: Major
    Found in wc_model_gen/prokaryote/translation.py and 3 other locations - About 5 hrs to fix
    wc_model_gen/prokaryote/protein_degradation.py on lines 93..99
    wc_model_gen/prokaryote/rna_degradation.py on lines 74..80
    wc_model_gen/prokaryote/transcription.py on lines 76..81

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 96.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 4 locations. Consider refactoring.
    Open

                for rnap_kb in cell.observables.get_one(id='rna_polymerase_obs').expression.species:
                rnap_species_type_model = model.species_types.get_one(id=rnap_kb.species_type.id)
                rnap_model = rnap_species_type_model.species.get_one(compartment=cytosol)

                reaction.participants.add(rnap_model.species_coefficients.get_or_create(coefficient=-1))
    Severity: Major
    Found in wc_model_gen/prokaryote/transcription.py and 3 other locations - About 5 hrs to fix
    wc_model_gen/prokaryote/protein_degradation.py on lines 93..99
    wc_model_gen/prokaryote/rna_degradation.py on lines 74..80
    wc_model_gen/prokaryote/translation.py on lines 140..145

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 96.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

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