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KarrLab/wc_utils

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wc_utils/util/chem/DrawMolecule.java

Summary

Maintainability
C
1 day
Test Coverage

Method run has a Cognitive Complexity of 31 (exceeds 5 allowed). Consider refactoring.
Open

     public static java.lang.Object run(String inStructure, String inStructureFormat, String outImageFormat,
        int[] atomsToLabel, String[] atomElements, String[] atomLabels, int[] atomLabelColors, double atomLabelFontSize,
        int[][] atomSets, String[][] atomSetElements, int[] atomSetColors, 
        int[][][] bondSets, String[][][] bondSetElements, int[] bondSetColors, 
        boolean showAtomNums,
Severity: Minor
Found in wc_utils/util/chem/DrawMolecule.java - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method run has 59 lines of code (exceeds 25 allowed). Consider refactoring.
Open

     public static java.lang.Object run(String inStructure, String inStructureFormat, String outImageFormat,
        int[] atomsToLabel, String[] atomElements, String[] atomLabels, int[] atomLabelColors, double atomLabelFontSize,
        int[][] atomSets, String[][] atomSetElements, int[] atomSetColors, 
        int[][][] bondSets, String[][][] bondSetElements, int[] bondSetColors, 
        boolean showAtomNums,
Severity: Major
Found in wc_utils/util/chem/DrawMolecule.java - About 2 hrs to fix

    Method run has 18 arguments (exceeds 4 allowed). Consider refactoring.
    Open

         public static java.lang.Object run(String inStructure, String inStructureFormat, String outImageFormat,
        int[] atomsToLabel, String[] atomElements, String[] atomLabels, int[] atomLabelColors, double atomLabelFontSize,
        int[][] atomSets, String[][] atomSetElements, int[] atomSetColors, 
        int[][][] bondSets, String[][][] bondSetElements, int[] bondSetColors, 
        boolean showAtomNums,
    Severity: Major
    Found in wc_utils/util/chem/DrawMolecule.java - About 2 hrs to fix

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