Function get_fs_listing has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

def get_fs_listing(path: str):
    try:
        abspath = Path(path).expanduser().resolve()
    # Triggered by empty DVD drive on Windows
    except PermissionError as e:

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Function detect_shape has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

def detect_shape(path: str) -> tuple[int, tuple[int, ...]]:
    series_header = read_series_header(path)

    if series_header.version != 2:
        raise DetectionError(

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Function run_each_partition has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

    def run_each_partition(self, partitions, fn, all_nodes=False):
        """
        Run `fn` for all partitions. Yields results in order of completion.

        Parameters

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Function disjunct_multiplier has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

def disjunct_multiplier(excluded, sig_shape, base_shape=1, target=1):
    '''
    Calculate an integer i close to target which is a multiple of base_shape
    and for which i * n not in "excluded" for any n > 0, i * n < sig_shape.

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Function _parse_header_bytes has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

    def _parse_header_bytes(header: bytes, filesize: int) -> HeaderDict:
        header: str = header.decode(encoding='ascii', errors='ignore')
        parts = header.split(",")
        header_size_bytes = int(parts[2])
        parts = [p

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Function _get_tiles_normal has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

    def _get_tiles_normal(self, tiling_scheme: TilingScheme, dest_dtype):
        with self._get_h5ds() as dataset:
            # because the dtype conversion done by HDF5 itself can be quite slow,
            # we need to use a buffer for reading in hdf5 native dtype:
            data_flat = np.zeros(tiling_scheme.shape, dtype=dataset.dtype).reshape((-1,))

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Function array_backends has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

Open

    def array_backends(self) -> Sequence[ArrayBackend]:
        """
        All backends can be returned on request

        .. versionadded:: 0.11.0

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Function compoundAnalysisReducer has 39 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export const compoundAnalysisReducer = (state = initialCompoundAnalysisState, action: AllActions): CompoundAnalysisReducerState => {
    switch (action.type) {
        case compoundAnalysisActions.ActionTypes.CREATED: {
            const newCompoundAnalysis = {
                doAutoStart: action.payload.autoStart,

Function _frms6_read_ranges_tile_block has 16 arguments (exceeds 8 allowed). Consider refactoring.

Open

def _frms6_read_ranges_tile_block(

Function _mib_2x2_tile_block has 16 arguments (exceeds 8 allowed). Consider refactoring.

Open

def _mib_2x2_tile_block(

Function _k2is_read_ranges_tile_block has 16 arguments (exceeds 8 allowed). Consider refactoring.

Open

def _k2is_read_ranges_tile_block(

Function _read_block_dense has 16 arguments (exceeds 8 allowed). Consider refactoring.

Open

    def _read_block_dense(

Function _default_read_ranges_tile_block has 16 arguments (exceeds 8 allowed). Consider refactoring.

Open

def _default_read_ranges_tile_block(

Function createOrUpdate has 36 lines of code (exceeds 25 allowed). Consider refactoring.

Open

export function* createOrUpdate(
    compoundAnalysis: CompoundAnalysisState, analysisId: string | undefined,
    analysisIndex: number, details: AnalysisDetails
): Generator<unknown, string, any> {
    if (analysisId) {

Function main has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

def main(port, local_directory, browser, cpus, gpus, open_ds, log_level,
         insecure, host="localhost", token_path=None, preload: tuple[str, ...] = (),
         snooze_timeout: Optional[float] = None):
    # Mitigation for https://stackoverflow.com/questions/71283820/
    #   directory-parameter-on-windows-has-trailing-backslash-replaced-with-double-quote

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Function get_resource_details has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    def get_resource_details(self):
        workers = self.get_available_workers()
        details = {}

        for worker in workers:

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Function _build_sparse has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

def _build_sparse(m, dtype: npt.DTypeLike, sparse_backend: SparseSupportedT, backend: ArrayBackend):
    if sparse_backend == 'sparse.pydata' and backend == NUMPY:
        # sparse.pydata.org is fastest for masks with few layers
        # and few entries
        return m.astype(dtype)

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Function build_mapping has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

def build_mapping(el: Any,
                  unpackable_types: dict[type, Callable[[Iterable],
                                                        Iterable[tuple[Any, Any]]]] = None,
                  ignore_types: Optional[tuple[type, ...]] = None,
                  _pos: list[tuple[type, Any]] = None) -> list[list[tuple[type, Any]]]:

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Function __init__ has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

    def __init__(
        self,
        mask_factories: Union[FactoryT, Sequence[FactoryT]],
        dtype: Optional[npt.DTypeLike] = None,
        use_sparse: Optional[Union[bool, SparseSupportedT]] = None,

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Function CenterOfMassAnalysis has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

Open

const CenterOfMassAnalysis: React.FC<CompoundAnalysisProps> = ({ compoundAnalysis, dataset }) => {
    const { shape } = dataset.params;
    const [scanHeight, scanWidth, imageHeight, imageWidth] = shape;
    const minLength = Math.min(imageWidth, imageHeight);
    const [cx, setCx] = useState(imageWidth / 2);

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