LiberTEM/LiberTEM

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Similar blocks of code found in 2 locations. Consider refactoring.
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const FEMAnalysis: React.FC<CompoundAnalysisProps> = ({ compoundAnalysis, dataset }) => {
    const { shape } = dataset.params;
    const [scanHeight, scanWidth, imageHeight, imageWidth] = shape;
    const minLength = Math.min(imageWidth, imageHeight);

Severity: Major
Found in client/src/compoundAnalysis/components/FEM.tsx and 1 other location - About 5 days to fix
client/src/compoundAnalysis/components/RingMaskAnalysis.tsx on lines 17..120

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 974.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
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const RingMaskAnalysis: React.FC<CompoundAnalysisProps> = ({ compoundAnalysis, dataset }) => {
    const { shape } = dataset.params;
    const [scanHeight, scanWidth, imageHeight, imageWidth] = shape;
    const minLength = Math.min(imageWidth, imageHeight);

Severity: Major
Found in client/src/compoundAnalysis/components/RingMaskAnalysis.tsx and 1 other location - About 5 days to fix
client/src/compoundAnalysis/components/FEM.tsx on lines 17..120

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 974.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File base.py has 2244 lines of code (exceeds 400 allowed). Consider refactoring.
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from collections import defaultdict, OrderedDict
from contextlib import contextmanager
import typing
from typing import (
    Any, Optional,
Severity: Major
Found in src/libertem/udf/base.py - About 5 days to fix

    File api.py has 1483 lines of code (exceeds 400 allowed). Consider refactoring.
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    from typing import (
        TYPE_CHECKING, Any, Optional, Union, overload
    )
    from collections.abc import Iterable, Generator, Coroutine
    from typing_extensions import Literal
    Severity: Major
    Found in src/libertem/api.py - About 3 days to fix

      Similar blocks of code found in 5 locations. Consider refactoring.
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      const SEQFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/SEQParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open
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      const BLOFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/BLOParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open
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      • Wontfix
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      const MIBFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/MIBParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open
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      • Wontfix
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      const TVIPSFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/TVIPSParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open
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      • Wontfix
      Cancel

      const NPYFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/NPYParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open
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      const K2ISFileParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/K2ISParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/EMPADParamsForm.tsx on lines 23..53
      client/src/dataset/components/FRMS6ParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open
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      • Wontfix
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      const EMPADParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/EMPADParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/FRMS6ParamsForm.tsx on lines 23..53
      client/src/dataset/components/K2ISParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open
      • Open
      • Confirmed
      • Invalid
      • Wontfix
      Cancel

      const FRMS6ParamsForm: React.FC<MergedProps> = ({
          values,
          info,
          isSubmitting,
          handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/FRMS6ParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/EMPADParamsForm.tsx on lines 23..53
      client/src/dataset/components/K2ISParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      File mib.py has 1009 lines of code (exceeds 400 allowed). Consider refactoring.
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      import re
      import os
      import platform
      from glob import glob, escape
      import logging
      Severity: Major
      Found in src/libertem/io/dataset/mib.py - About 2 days to fix

        File pipelined.py has 1005 lines of code (exceeds 400 allowed). Consider refactoring.
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        import itertools
        import os
        import sys
        import logging
        import functools
        Severity: Major
        Found in src/libertem/executor/pipelined.py - About 2 days to fix

          Similar blocks of code found in 2 locations. Consider refactoring.
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          const RawCSRParamsForm: React.FC<MergedProps> = ({
              values,
              info,
              isSubmitting,
              handleSubmit,
          Severity: Major
          Found in client/src/dataset/components/RawCSRParamsForm.tsx and 1 other location - About 1 day to fix
          client/src/dataset/components/SERParamsForm.tsx on lines 22..43

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 300.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 2 locations. Consider refactoring.
          Open
          • Open
          • Confirmed
          • Invalid
          • Wontfix
          Cancel

          const SERParamsForm: React.FC<MergedProps> = ({
              values,
              info,
              isSubmitting,
              handleSubmit,
          Severity: Major
          Found in client/src/dataset/components/SERParamsForm.tsx and 1 other location - About 1 day to fix
          client/src/dataset/components/RawCSRParamsForm.tsx on lines 22..43

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 300.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          File k2is.py has 849 lines of code (exceeds 400 allowed). Consider refactoring.
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          import os
          import re
          import glob
          import math
          import typing
          Severity: Major
          Found in src/libertem/io/dataset/k2is.py - About 1 day to fix

            File buffers.py has 825 lines of code (exceeds 400 allowed). Consider refactoring.
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            from typing import Any, Optional, Union, TYPE_CHECKING, Generic, TypeVar
            from collections.abc import Iterable
            from typing_extensions import Literal
            import mmap
            import math
            Severity: Major
            Found in src/libertem/common/buffers.py - About 1 day to fix

              Similar blocks of code found in 4 locations. Consider refactoring.
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              export default withValidation<DatasetParamsBLO, DatasetParamsBLOForForm, DatasetInfoBLO>({
                  mapPropsToValues: ({ path, initial }) => ({
                      name: getInitialName("name", path, initial),
                      nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                      sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
              Severity: Major
              Found in client/src/dataset/components/BLOParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/EMPADParamsForm.tsx on lines 55..79
              client/src/dataset/components/FRMS6ParamsForm.tsx on lines 55..79
              client/src/dataset/components/K2ISParamsForm.tsx on lines 55..79

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
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              • Wontfix
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              export default withValidation<DatasetParamsK2IS, DatasetParamsK2ISForForm, DatasetInfoK2IS>({
                  mapPropsToValues: ({ path, initial }) => ({
                      name: getInitialName("name", path, initial),
                      nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                      sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
              Severity: Major
              Found in client/src/dataset/components/K2ISParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/BLOParamsForm.tsx on lines 56..81
              client/src/dataset/components/EMPADParamsForm.tsx on lines 55..79
              client/src/dataset/components/FRMS6ParamsForm.tsx on lines 55..79

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
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              • Confirmed
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              • Wontfix
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              export default withValidation<DatasetParamsEMPAD, DatasetParamsEMPADForForm, DatasetInfoEMPAD>({
                  mapPropsToValues: ({ path, initial }) => ({
                      name: getInitialName("name", path, initial),
                      nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                      sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
              Severity: Major
              Found in client/src/dataset/components/EMPADParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/BLOParamsForm.tsx on lines 56..81
              client/src/dataset/components/FRMS6ParamsForm.tsx on lines 55..79
              client/src/dataset/components/K2ISParamsForm.tsx on lines 55..79

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
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              • Confirmed
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              • Wontfix
              Cancel

              export default withValidation<DatasetParamsMIB, DatasetParamsMIBForForm, DatasetInfoMIB>({
                  formToJson: (values, path) => ({
                      path,
                      type: DatasetTypes.MIB,
                      name: values.name,
              Severity: Major
              Found in client/src/dataset/components/MIBParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/NPYParamsForm.tsx on lines 58..82
              client/src/dataset/components/SEQParamsForm.tsx on lines 58..82
              client/src/dataset/components/TVIPSParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              export default withValidation<DatasetParamsSEQ, DatasetParamsSEQForForm, DatasetInfoSEQ>({
                  formToJson: (values, path) => ({
                      path,
                      type: DatasetTypes.SEQ,
                      name: values.name,
              Severity: Major
              Found in client/src/dataset/components/SEQParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/MIBParamsForm.tsx on lines 58..82
              client/src/dataset/components/NPYParamsForm.tsx on lines 58..82
              client/src/dataset/components/TVIPSParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              export default withValidation<DatasetParamsNPY, DatasetParamsNPYForForm, DatasetInfoNPY>({
                  formToJson: (values, path) => ({
                      path,
                      type: DatasetTypes.NPY,
                      name: values.name,
              Severity: Major
              Found in client/src/dataset/components/NPYParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/MIBParamsForm.tsx on lines 58..82
              client/src/dataset/components/SEQParamsForm.tsx on lines 58..82
              client/src/dataset/components/TVIPSParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              export default withValidation<DatasetParamsFRMS6, DatasetParamsFRMS6ForForm, DatasetInfoFRMS6>({
                  mapPropsToValues: ({ path, initial }) => ({
                      name: getInitialName("name", path, initial),
                      nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                      sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
              Severity: Major
              Found in client/src/dataset/components/FRMS6ParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/BLOParamsForm.tsx on lines 56..81
              client/src/dataset/components/EMPADParamsForm.tsx on lines 55..79
              client/src/dataset/components/K2ISParamsForm.tsx on lines 55..79

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              export default withValidation<DatasetParamsTVIPS, DatasetParamsTVIPSForForm, DatasetInfoTVIPS>({
                  formToJson: (values, path) => ({
                      path,
                      type: DatasetTypes.TVIPS,
                      name: values.name,
              Severity: Major
              Found in client/src/dataset/components/TVIPSParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/MIBParamsForm.tsx on lines 58..82
              client/src/dataset/components/NPYParamsForm.tsx on lines 58..82
              client/src/dataset/components/SEQParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Function _execution_plan has a Cognitive Complexity of 64 (exceeds 5 allowed). Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              def _execution_plan(
                  udfs, ds: Union[DataSet, DataSetMeta], device_class: Optional[DeviceClass] = None,
                  available_backends: Iterable[ArrayBackend] = BACKENDS
              ) -> tuple[ArrayBackend, ExecutionPlan]:
                  '''
              Severity: Minor
              Found in src/libertem/udf/base.py - About 1 day to fix

              Cognitive Complexity

              Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

              A method's cognitive complexity is based on a few simple rules:

              • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
              • Code is considered more complex for each "break in the linear flow of the code"
              • Code is considered more complex when "flow breaking structures are nested"

              Further reading

              File hdf5.py has 729 lines of code (exceeds 400 allowed). Consider refactoring.
              Open
              • Open
              • Confirmed
              • Invalid
              • Wontfix
              Cancel

              import os
              import contextlib
              import typing
              from typing import Optional
              import warnings
              Severity: Major
              Found in src/libertem/io/dataset/hdf5.py - About 1 day to fix

                Similar blocks of code found in 2 locations. Consider refactoring.
                Open
                • Open
                • Confirmed
                • Invalid
                • Wontfix
                Cancel

                export default withValidation<DatasetParamsSER, DatasetParamsSERForForm, DatasetInfoSER>({
                    mapPropsToValues: ({ path, initial }) => ({
                        name: getInitialName("name", path, initial),
                        nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                        sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
                Severity: Major
                Found in client/src/dataset/components/SERParamsForm.tsx and 1 other location - About 1 day to fix
                client/src/dataset/components/RawCSRParamsForm.tsx on lines 45..67

                Duplicated Code

                Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                Tuning

                This issue has a mass of 230.

                We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                Refactorings

                Further Reading

                Similar blocks of code found in 2 locations. Consider refactoring.
                Open
                • Open
                • Confirmed
                • Invalid
                • Wontfix
                Cancel

                export default withValidation<DatasetParamsRawCSR, DatasetParamsRawCSRForForm, DatasetInfoRawCSR>({
                    mapPropsToValues: ({ path, initial }) => ({
                        name: getInitialName("name", path, initial),
                        nav_shape: adjustShapeWithBounds(getInitial("nav_shape", "", initial).toString(), "nav"),
                        sig_shape: adjustShapeWithBounds(getInitial("sig_shape", "", initial).toString(), "sig"),
                Severity: Major
                Found in client/src/dataset/components/RawCSRParamsForm.tsx and 1 other location - About 1 day to fix
                client/src/dataset/components/SERParamsForm.tsx on lines 45..67

                Duplicated Code

                Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                Tuning

                This issue has a mass of 230.

                We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                Refactorings

                Further Reading

                Function DatasetOpen has a Cognitive Complexity of 59 (exceeds 5 allowed). Consider refactoring.
                Open
                • Open
                • Confirmed
                • Invalid
                • Wontfix
                Cancel

                const DatasetOpen = () => {
                    const dispatch = useDispatch();
                    const openState = useSelector((state: RootReducer) => state.openDataset);
                
                    const [didReset, setReset] = React.useState(false);
                Severity: Minor
                Found in client/src/dataset/components/DatasetOpen.tsx - About 1 day to fix

                Cognitive Complexity

                Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                A method's cognitive complexity is based on a few simple rules:

                • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                • Code is considered more complex for each "break in the linear flow of the code"
                • Code is considered more complex when "flow breaking structures are nested"

                Further reading

                File dask.py has 693 lines of code (exceeds 400 allowed). Consider refactoring.
                Open
                • Open
                • Confirmed
                • Invalid
                • Wontfix
                Cancel

                import os
                import contextlib
                from copy import deepcopy
                import functools
                import logging
                Severity: Major
                Found in src/libertem/executor/dask.py - About 1 day to fix

                  Identical blocks of code found in 2 locations. Consider refactoring.
                  Open
                  • Open
                  • Confirmed
                  • Invalid
                  • Wontfix
                  Cancel

                      with api.Context(executor=InlineJobExecutor()) as ctx:
                          ds = ctx.load(
                              "RAW",
                              path=r"C:\Users\Dieter\testfile-32-32-32-32-float32.raw",
                              nav_shape=(32, 32),
                  Severity: Major
                  Found in examples/digital-micrograph-inline.py and 1 other location - About 1 day to fix
                  examples/digital-micrograph-local.py on lines 29..48

                  Duplicated Code

                  Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                  Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                  When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                  Tuning

                  This issue has a mass of 133.

                  We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                  The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                  If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                  See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                  Refactorings

                  Further Reading

                  Identical blocks of code found in 2 locations. Consider refactoring.
                  Open
                  • Open
                  • Confirmed
                  • Invalid
                  • Wontfix
                  Cancel

                      with api.Context() as ctx:
                          ds = ctx.load(
                              "RAW",
                              path=r"C:\Users\Dieter\testfile-32-32-32-32-float32.raw",
                              nav_shape=(32, 32),
                  Severity: Major
                  Found in examples/digital-micrograph-local.py and 1 other location - About 1 day to fix
                  examples/digital-micrograph-inline.py on lines 20..39

                  Duplicated Code

                  Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                  Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                  When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                  Tuning

                  This issue has a mass of 133.

                  We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                  The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                  If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                  See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                  Refactorings

                  Further Reading

                  File messages.ts has 609 lines of code (exceeds 400 allowed). Consider refactoring.
                  Open
                  • Open
                  • Confirmed
                  • Invalid
                  • Wontfix
                  Cancel

                  import { JobList } from "./analysis/types"
                  
                  /*
                   * Common
                   */
                  Severity: Major
                  Found in client/src/messages.ts - About 7 hrs to fix

                    Function _correct_numba_inplace has a Cognitive Complexity of 45 (exceeds 5 allowed). Consider refactoring.
                    Open
                    • Open
                    • Confirmed
                    • Invalid
                    • Wontfix
                    Cancel

                    def _correct_numba_inplace(buffer, dark_image, gain_map, exclude_pixels, repair_environments,
                            repair_counts):
                        '''
                        Numerical work horse to perform detector corrections
                    
                    
                    Severity: Minor
                    Found in src/libertem/io/corrections/detector.py - About 6 hrs to fix

                    Cognitive Complexity

                    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                    A method's cognitive complexity is based on a few simple rules:

                    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                    • Code is considered more complex for each "break in the linear flow of the code"
                    • Code is considered more complex when "flow breaking structures are nested"

                    Further reading

                    File frms6.py has 596 lines of code (exceeds 400 allowed). Consider refactoring.
                    Open
                    • Open
                    • Confirmed
                    • Invalid
                    • Wontfix
                    Cancel

                    import os
                    import re
                    import csv
                    from glob import glob, escape
                    import typing
                    Severity: Major
                    Found in src/libertem/io/dataset/frms6.py - About 6 hrs to fix

                      File com.py has 595 lines of code (exceeds 400 allowed). Consider refactoring.
                      Open
                      • Open
                      • Confirmed
                      • Invalid
                      • Wontfix
                      Cancel

                      from enum import IntEnum
                      from typing import NamedTuple, Optional, Union
                      from typing_extensions import Literal
                      
                      import numpy as np
                      Severity: Major
                      Found in src/libertem/udf/com.py - About 6 hrs to fix

                        Similar blocks of code found in 3 locations. Consider refactoring.
                        Open
                        • Open
                        • Confirmed
                        • Invalid
                        • Wontfix
                        Cancel

                            const frameViewHandlesreal: HandleRenderFunction = (handleDragStart, handleDrop) => (<>
                                <DraggableHandle x={realCenterX} y={realCenterY}
                                    imageWidth={imageWidth}
                                    onDragMove={handleCenterChange}
                                    parentOnDragStart={handleDragStart}
                        Severity: Major
                        Found in client/src/compoundAnalysis/components/FFTAnalysis.tsx and 2 other locations - About 6 hrs to fix
                        client/src/compoundAnalysis/components/DiskMaskAnalysis.tsx on lines 36..49
                        client/src/compoundAnalysis/components/roi/DiskROI.tsx on lines 43..56

                        Duplicated Code

                        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                        Tuning

                        This issue has a mass of 161.

                        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                        Refactorings

                        Further Reading

                        Similar blocks of code found in 3 locations. Consider refactoring.
                        Open
                        • Open
                        • Confirmed
                        • Invalid
                        • Wontfix
                        Cancel

                            const frameViewHandles: HandleRenderFunction = (handleDragStart, handleDrop) => (<>
                                <DraggableHandle x={cx} y={cy}
                                    imageWidth={imageWidth}
                                    onDragMove={handleCenterChange}
                                    parentOnDragStart={handleDragStart}
                        Severity: Major
                        Found in client/src/compoundAnalysis/components/DiskMaskAnalysis.tsx and 2 other locations - About 6 hrs to fix
                        client/src/compoundAnalysis/components/FFTAnalysis.tsx on lines 87..100
                        client/src/compoundAnalysis/components/roi/DiskROI.tsx on lines 43..56

                        Duplicated Code

                        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                        Tuning

                        This issue has a mass of 161.

                        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                        Refactorings

                        Further Reading

                        Similar blocks of code found in 3 locations. Consider refactoring.
                        Open
                        • Open
                        • Confirmed
                        • Invalid
                        • Wontfix
                        Cancel

                            const diskRoiHandles: HandleRenderFunction = (handleDragStart, handleDrop) => (<>
                                <DraggableHandle x={cx} y={cy}
                                    imageWidth={scanWidth}
                                    onDragMove={handleCenterChange}
                                    parentOnDragStart={handleDragStart}
                        Severity: Major
                        Found in client/src/compoundAnalysis/components/roi/DiskROI.tsx and 2 other locations - About 6 hrs to fix
                        client/src/compoundAnalysis/components/DiskMaskAnalysis.tsx on lines 36..49
                        client/src/compoundAnalysis/components/FFTAnalysis.tsx on lines 87..100

                        Duplicated Code

                        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                        Tuning

                        This issue has a mass of 161.

                        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                        Refactorings

                        Further Reading

                        File executor.py has 567 lines of code (exceeds 400 allowed). Consider refactoring.
                        Open
                        • Open
                        • Confirmed
                        • Invalid
                        • Wontfix
                        Cancel

                        import queue
                        from typing import (
                            Callable, Optional, Any, TYPE_CHECKING,
                            TypeVar,
                        )
                        Severity: Major
                        Found in src/libertem/common/executor.py - About 6 hrs to fix

                          File seq.py has 565 lines of code (exceeds 400 allowed). Consider refactoring.
                          Open
                          • Open
                          • Confirmed
                          • Invalid
                          • Wontfix
                          Cancel

                          # Based on the SEQ reader of the PIMS project, with the following license:
                          #
                          #    Copyright (c) 2013-2014 PIMS contributors
                          #    https://github.com/soft-matter/pims
                          #    All rights reserved
                          Severity: Major
                          Found in src/libertem/io/dataset/seq.py - About 5 hrs to fix

                            Similar blocks of code found in 2 locations. Consider refactoring.
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                            export function* handleTaskResult(msg: ReturnType<typeof channelMessages.Messages.taskResult>, socketChannel: SocketChannel, timestamp: number) {
                                const parts = (yield call(handleBinaryParts, msg.followup.numMessages, socketChannel)) as channelMessages.BinaryMessage[];
                                const images = parts.map((part, idx) => ({ imageURL: part.objectURL, description: msg.followup.descriptions[idx] }));
                                yield put(channelActions.Actions.taskResult(msg.job, images, timestamp));
                            }
                            Severity: Major
                            Found in client/src/channel/sagas.ts and 1 other location - About 5 hrs to fix
                            client/src/channel/sagas.ts on lines 200..204

                            Duplicated Code

                            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                            Tuning

                            This issue has a mass of 153.

                            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                            Refactorings

                            Further Reading

                            Similar blocks of code found in 2 locations. Consider refactoring.
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                            export function* handleFinishJob(msg: ReturnType<typeof channelMessages.Messages.finishJob>, socketChannel: SocketChannel, timestamp: number) {
                                const parts = (yield call(handleBinaryParts, msg.followup.numMessages, socketChannel)) as channelMessages.BinaryMessage[];
                                const images = parts.map((part, idx) => ({ imageURL: part.objectURL, description: msg.followup.descriptions[idx] }));
                                yield put(channelActions.Actions.finishJob(msg.job, images, timestamp));
                            }
                            Severity: Major
                            Found in client/src/channel/sagas.ts and 1 other location - About 5 hrs to fix
                            client/src/channel/sagas.ts on lines 194..198

                            Duplicated Code

                            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                            Tuning

                            This issue has a mass of 153.

                            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                            Refactorings

                            Further Reading

                            Cyclomatic complexity is too high in method sync_sectors. (30)
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
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                                def sync_sectors(self):
                                    for b in self.first_blocks():
                                        assert b.is_valid, "first block is not valid!"
                                    # sync up all sectors to start with the same `block_count`
                                    block_with_max_idx = sorted(self.first_blocks(), key=lambda b: b.header['block_count'])[-1]
                            Severity: Minor
                            Found in src/libertem/io/dataset/k2is.py by radon

                            Cyclomatic Complexity

                            Cyclomatic Complexity corresponds to the number of decisions a block of code contains plus 1. This number (also called McCabe number) is equal to the number of linearly independent paths through the code. This number can be used as a guide when testing conditional logic in blocks.

                            Radon analyzes the AST tree of a Python program to compute Cyclomatic Complexity. Statements have the following effects on Cyclomatic Complexity:

                            Construct Effect on CC Reasoning
                            if +1 An if statement is a single decision.
                            elif +1 The elif statement adds another decision.
                            else +0 The else statement does not cause a new decision. The decision is at the if.
                            for +1 There is a decision at the start of the loop.
                            while +1 There is a decision at the while statement.
                            except +1 Each except branch adds a new conditional path of execution.
                            finally +0 The finally block is unconditionally executed.
                            with +1 The with statement roughly corresponds to a try/except block (see PEP 343 for details).
                            assert +1 The assert statement internally roughly equals a conditional statement.
                            Comprehension +1 A list/set/dict comprehension of generator expression is equivalent to a for loop.
                            Boolean Operator +1 Every boolean operator (and, or) adds a decision point.

                            Source: http://radon.readthedocs.org/en/latest/intro.html

                            Similar blocks of code found in 2 locations. Consider refactoring.
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                                            <Grid.Row>
                                                <Grid.Column width={5}>
                                                    <p>{title1}</p>
                                                </Grid.Column>
                            
                            
                            client/src/compoundAnalysis/components/layouts/AnalysisLayoutTwoRes.tsx on lines 31..44

                            Duplicated Code

                            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                            Tuning

                            This issue has a mass of 149.

                            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                            Refactorings

                            Further Reading

                            Similar blocks of code found in 2 locations. Consider refactoring.
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                                            <Grid.Row>
                                                <Grid.Column width={4}>
                                                    <p>{title1}</p>
                                                </Grid.Column>
                            
                            
                            client/src/compoundAnalysis/components/layouts/AnalysisLayoutThreeCol.tsx on lines 30..42

                            Duplicated Code

                            Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                            Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                            When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                            Tuning

                            This issue has a mass of 149.

                            We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                            The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                            If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                            See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                            Refactorings

                            Further Reading

                            Cyclomatic complexity is too high in function worker_loop. (24)
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                            def worker_loop(
                                queues: WorkerQueues,
                                work_mem: dict,
                                worker_idx: int,
                                env: Environment
                            Severity: Minor
                            Found in src/libertem/executor/pipelined.py by radon

                            Cyclomatic Complexity

                            Cyclomatic Complexity corresponds to the number of decisions a block of code contains plus 1. This number (also called McCabe number) is equal to the number of linearly independent paths through the code. This number can be used as a guide when testing conditional logic in blocks.

                            Radon analyzes the AST tree of a Python program to compute Cyclomatic Complexity. Statements have the following effects on Cyclomatic Complexity:

                            Construct Effect on CC Reasoning
                            if +1 An if statement is a single decision.
                            elif +1 The elif statement adds another decision.
                            else +0 The else statement does not cause a new decision. The decision is at the if.
                            for +1 There is a decision at the start of the loop.
                            while +1 There is a decision at the while statement.
                            except +1 Each except branch adds a new conditional path of execution.
                            finally +0 The finally block is unconditionally executed.
                            with +1 The with statement roughly corresponds to a try/except block (see PEP 343 for details).
                            assert +1 The assert statement internally roughly equals a conditional statement.
                            Comprehension +1 A list/set/dict comprehension of generator expression is equivalent to a for loop.
                            Boolean Operator +1 Every boolean operator (and, or) adds a decision point.

                            Source: http://radon.readthedocs.org/en/latest/intro.html

                            Function radial_bins has a Cognitive Complexity of 32 (exceeds 5 allowed). Consider refactoring.
                            Open
                            • Open
                            • Confirmed
                            • Invalid
                            • Wontfix
                            Cancel

                            def radial_bins(centerX, centerY, imageSizeX, imageSizeY,
                                    radius=None, radius_inner=0, n_bins=None, normalize=False, use_sparse=None, dtype=None):
                                '''
                                Generate antialiased rings
                                '''
                            Severity: Minor
                            Found in src/libertem/masks.py - About 4 hrs to fix

                            Cognitive Complexity

                            Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                            A method's cognitive complexity is based on a few simple rules:

                            • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                            • Code is considered more complex for each "break in the linear flow of the code"
                            • Code is considered more complex when "flow breaking structures are nested"

                            Further reading

                            Severity
                            Category