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Similar blocks of code found in 2 locations. Consider refactoring.
Open

const RingMaskAnalysis: React.FC<CompoundAnalysisProps> = ({ compoundAnalysis, dataset }) => {
    const { shape } = dataset.params;
    const [scanHeight, scanWidth, imageHeight, imageWidth] = shape;
    const minLength = Math.min(imageWidth, imageHeight);
Severity: Major
Found in client/src/compoundAnalysis/components/RingMaskAnalysis.tsx and 1 other location - About 5 days to fix
client/src/compoundAnalysis/components/FEM.tsx on lines 17..120

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 974.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

const FEMAnalysis: React.FC<CompoundAnalysisProps> = ({ compoundAnalysis, dataset }) => {
    const { shape } = dataset.params;
    const [scanHeight, scanWidth, imageHeight, imageWidth] = shape;
    const minLength = Math.min(imageWidth, imageHeight);
Severity: Major
Found in client/src/compoundAnalysis/components/FEM.tsx and 1 other location - About 5 days to fix
client/src/compoundAnalysis/components/RingMaskAnalysis.tsx on lines 17..120

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 974.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File base.py has 2244 lines of code (exceeds 400 allowed). Consider refactoring.
Open

from collections import defaultdict, OrderedDict
from contextlib import contextmanager
import typing
from typing import (
    Any, Optional,
Severity: Major
Found in src/libertem/udf/base.py - About 5 days to fix

    File api.py has 1483 lines of code (exceeds 400 allowed). Consider refactoring.
    Open

    from typing import (
    TYPE_CHECKING, Any, Optional, Union, overload
)
from collections.abc import Iterable, Generator, Coroutine
from typing_extensions import Literal
    Severity: Major
    Found in src/libertem/api.py - About 3 days to fix

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      const BLOFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/BLOParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      const TVIPSFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/TVIPSParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      const MIBFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/MIBParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      const SEQFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/SEQParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/NPYParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 5 locations. Consider refactoring.
      Open

      const NPYFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/NPYParamsForm.tsx and 4 other locations - About 2 days to fix
      client/src/dataset/components/BLOParamsForm.tsx on lines 23..54
      client/src/dataset/components/MIBParamsForm.tsx on lines 25..56
      client/src/dataset/components/SEQParamsForm.tsx on lines 25..56
      client/src/dataset/components/TVIPSParamsForm.tsx on lines 25..56

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 399.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      const FRMS6ParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/FRMS6ParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/EMPADParamsForm.tsx on lines 23..53
      client/src/dataset/components/K2ISParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      const K2ISFileParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/K2ISParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/EMPADParamsForm.tsx on lines 23..53
      client/src/dataset/components/FRMS6ParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      Similar blocks of code found in 3 locations. Consider refactoring.
      Open

      const EMPADParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
      Severity: Major
      Found in client/src/dataset/components/EMPADParamsForm.tsx and 2 other locations - About 2 days to fix
      client/src/dataset/components/FRMS6ParamsForm.tsx on lines 23..53
      client/src/dataset/components/K2ISParamsForm.tsx on lines 23..53

      Duplicated Code

      Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

      Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

      When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

      Tuning

      This issue has a mass of 390.

      We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

      The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

      If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

      See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

      Refactorings

      Further Reading

      File mib.py has 1009 lines of code (exceeds 400 allowed). Consider refactoring.
      Open

      import re
import os
import platform
from glob import glob, escape
import logging
      Severity: Major
      Found in src/libertem/io/dataset/mib.py - About 2 days to fix

        File pipelined.py has 1005 lines of code (exceeds 400 allowed). Consider refactoring.
        Open

        import itertools
import os
import sys
import logging
import functools
        Severity: Major
        Found in src/libertem/executor/pipelined.py - About 2 days to fix

          Similar blocks of code found in 2 locations. Consider refactoring.
          Open

          const RawCSRParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
          Severity: Major
          Found in client/src/dataset/components/RawCSRParamsForm.tsx and 1 other location - About 1 day to fix
          client/src/dataset/components/SERParamsForm.tsx on lines 22..43

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 300.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          Similar blocks of code found in 2 locations. Consider refactoring.
          Open

          const SERParamsForm: React.FC<MergedProps> = ({
    values,
    info,
    isSubmitting,
    handleSubmit,
          Severity: Major
          Found in client/src/dataset/components/SERParamsForm.tsx and 1 other location - About 1 day to fix
          client/src/dataset/components/RawCSRParamsForm.tsx on lines 22..43

          Duplicated Code

          Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

          Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

          When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

          Tuning

          This issue has a mass of 300.

          We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

          The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

          If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

          See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

          Refactorings

          Further Reading

          File k2is.py has 849 lines of code (exceeds 400 allowed). Consider refactoring.
          Open

          import os
import re
import glob
import math
import typing
          Severity: Major
          Found in src/libertem/io/dataset/k2is.py - About 1 day to fix

            File buffers.py has 825 lines of code (exceeds 400 allowed). Consider refactoring.
            Open

            from typing import Any, Optional, Union, TYPE_CHECKING, Generic, TypeVar
from collections.abc import Iterable
from typing_extensions import Literal
import mmap
import math
            Severity: Major
            Found in src/libertem/common/buffers.py - About 1 day to fix

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open

              export default withValidation<DatasetParamsSEQ, DatasetParamsSEQForForm, DatasetInfoSEQ>({
    formToJson: (values, path) => ({
        path,
        type: DatasetTypes.SEQ,
        name: values.name,
              Severity: Major
              Found in client/src/dataset/components/SEQParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/MIBParamsForm.tsx on lines 58..82
              client/src/dataset/components/NPYParamsForm.tsx on lines 58..82
              client/src/dataset/components/TVIPSParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

              Similar blocks of code found in 4 locations. Consider refactoring.
              Open

              export default withValidation<DatasetParamsNPY, DatasetParamsNPYForForm, DatasetInfoNPY>({
    formToJson: (values, path) => ({
        path,
        type: DatasetTypes.NPY,
        name: values.name,
              Severity: Major
              Found in client/src/dataset/components/NPYParamsForm.tsx and 3 other locations - About 1 day to fix
              client/src/dataset/components/MIBParamsForm.tsx on lines 58..82
              client/src/dataset/components/SEQParamsForm.tsx on lines 58..82
              client/src/dataset/components/TVIPSParamsForm.tsx on lines 58..82

              Duplicated Code

              Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

              Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

              When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

              Tuning

              This issue has a mass of 250.

              We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

              The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

              If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

              See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

              Refactorings

              Further Reading

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