LucaCappelletti94/keras_bed_sequence

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12
Parser process id: 12
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waiting 1s...
I, [2024-06-07T05:37:04.287583 #1]  INFO -- : Skipping file ./keras_bed_sequence/bed_sequence.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 15
    genome: Genome,
          ^
SyntaxError: invalid syntax


I, [2024-06-07T05:37:04.287652 #1]  INFO -- : Skipping file ./keras_bed_sequence/utils/fast_to_categorical.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 6
    def fast_to_categorical(y: np.ndarray, num_classes: int, unknown_nucleotide_value: float) -> np.ndarray:
                             ^
SyntaxError: invalid syntax


I, [2024-06-07T05:37:04.301756 #1]  INFO -- : Skipping file ./keras_bed_sequence/utils/nucleotides_to_numbers.py due to exception (CC::Engine::Analyzers::ParserError): `python2 /usr/src/app/lib/cc/engine/analyzers/python/parser.py` exited with code 1:
Traceback (most recent call last):
  File "/usr/src/app/lib/cc/engine/analyzers/python/parser.py", line 51, in <module>
    print(json.dumps(to_json(ast.parse(source))))
  File "/usr/local/python2/lib/python2.7/ast.py", line 37, in parse
    return compile(source, filename, mode, PyCF_ONLY_AST)
  File "<unknown>", line 9
    def nucleotides_to_numbers(nucleotides: str, sequences: np.ndarray) -> np.ndarray:
                                          ^
SyntaxError: invalid syntax