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LucaCappelletti94/keras_bed_sequence

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Function fast_to_categorical has a Cognitive Complexity of 11 (exceeds 5 allowed). Consider refactoring.
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def fast_to_categorical(y: np.ndarray, num_classes: int, unknown_nucleotide_value: float) -> np.ndarray:
    """Return one hot encoded batches.

    This is our implementation of to_categorical from keras.
    This implementation runs 6 times faster.
Severity: Minor
Found in keras_bed_sequence/utils/fast_to_categorical.py - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function __init__ has 8 arguments (exceeds 4 allowed). Consider refactoring.
Open

    def __init__(
Severity: Major
Found in keras_bed_sequence/bed_sequence.py - About 1 hr to fix

    Function nucleotides_to_numbers has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring.
    Open

    def nucleotides_to_numbers(nucleotides: str, sequences: np.ndarray) -> np.ndarray:
    """Return sequences encoded as small integers.

    Parameters
    --------------------------
    Severity: Minor
    Found in keras_bed_sequence/utils/nucleotides_to_numbers.py - About 45 mins to fix

    Cognitive Complexity

    Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

    A method's cognitive complexity is based on a few simple rules:

    • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
    • Code is considered more complex for each "break in the linear flow of the code"
    • Code is considered more complex when "flow breaking structures are nested"

    Further reading

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