NationalGenomicsInfrastructure/ngi_pipeline

language: python

python:
    - "2.7"
    - "3.8"

install:
    - pip install -e . -r ./requirements-dev.txt
    - pip install --upgrade codecov

before_script:
    - mkdir ~/.ngipipeline && cp test_ngi_config.yaml ~/.ngipipeline/ngi_config.yaml

script:
    - cd ngi_pipeline/tests && nosetests --with-coverage -v -s conductor/ engines/piper_ngi/ engines/sarek engines/qc_ngi  utils/ database/test_communicate.py database/test_filesystem.py database/test_utils.py

after_success:
    - codecov

notifications:
    email: false