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NationalGenomicsInfrastructure/ngi_pipeline

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ngi_pipeline/conductor/launchers.py

Summary

Maintainability
B
5 hrs
Test Coverage

Function launch_analysis has a Cognitive Complexity of 29 (exceeds 5 allowed). Consider refactoring.
Open

def launch_analysis(projects_to_analyze, restart_failed_jobs=False,
                    restart_finished_jobs=False, restart_running_jobs=False,
                    no_qc=False, exec_mode="sbatch",
                    quiet=False, manual=False,
                    config=None, config_file_path=None):
Severity: Minor
Found in ngi_pipeline/conductor/launchers.py - About 4 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function launch_analysis has 10 arguments (exceeds 4 allowed). Consider refactoring.
Open

def launch_analysis(projects_to_analyze, restart_failed_jobs=False,
Severity: Major
Found in ngi_pipeline/conductor/launchers.py - About 1 hr to fix

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