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NationalGenomicsInfrastructure/ngi_pipeline

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ngi_pipeline/engines/sarek/local_process_tracking.py

Summary

Maintainability
A
1 hr
Test Coverage

Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

    def __init__(self, analysis_entry, charon_connector, tracking_connector, log, config=None):
Severity: Minor
Found in ngi_pipeline/engines/sarek/local_process_tracking.py - About 35 mins to fix

    Function update_charon_with_local_jobs_status has 5 arguments (exceeds 4 allowed). Consider refactoring.
    Open

    def update_charon_with_local_jobs_status(
    Severity: Minor
    Found in ngi_pipeline/engines/sarek/local_process_tracking.py - About 35 mins to fix

      Function update_charon_with_local_jobs_status has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
      Open

      def update_charon_with_local_jobs_status(
        config=None, log=None, tracking_connector=None, charon_connector=None, **kwargs):
    """
    Update Charon with the local changes in the SQLite tracking database.
      Severity: Minor
      Found in ngi_pipeline/engines/sarek/local_process_tracking.py - About 25 mins to fix

      Cognitive Complexity

      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

      A method's cognitive complexity is based on a few simple rules:

      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
      • Code is considered more complex for each "break in the linear flow of the code"
      • Code is considered more complex when "flow breaking structures are nested"

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