Sign upLogin

QInfer/python-qinfer

View on GitHub
Star

Showing 3,465 of 3,465 total issues

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            c - 0.99 * np.sqrt(s[0]) * U[:,0],
Severity: Major
Found in src/qinfer/tests/test_utils.py and 1 other location - About 1 hr to fix
src/qinfer/tests/test_utils.py on lines 125..125

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            c - 1.01 * np.sqrt(s[0]) * U[:,0],
Severity: Major
Found in src/qinfer/tests/test_utils.py and 1 other location - About 1 hr to fix
src/qinfer/tests/test_utils.py on lines 124..124

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def simulate_experiment(self, modelparams, expparams, repeat=1):
        super(RandomWalkModel, self).simulate_experiment(modelparams, expparams, repeat)
        return self.underlying_model.simulate_experiment(modelparams, expparams, repeat)
Severity: Major
Found in src/qinfer/derived_models.py and 1 other location - About 1 hr to fix
src/qinfer/derived_models.py on lines 697..699

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            c + 1.01 * np.sqrt(s[2]) * U[:,2],
Severity: Major
Found in src/qinfer/tests/test_utils.py and 1 other location - About 1 hr to fix
src/qinfer/tests/test_utils.py on lines 122..122

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @property
    def min(self):
        """
        Returns the minimum value of the domain.
Severity: Major
Found in src/qinfer/domains.py and 1 other location - About 1 hr to fix
src/qinfer/domains.py on lines 455..462

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    def simulate_experiment(self, modelparams, expparams, repeat=1):
        super(MLEModel, self).simulate_experiment(modelparams, expparams, repeat)
        return self.underlying_model.simulate_experiment(modelparams, expparams, repeat)
Severity: Major
Found in src/qinfer/derived_models.py and 1 other location - About 1 hr to fix
src/qinfer/derived_models.py on lines 729..731

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            c + 0.99 * np.sqrt(s[2]) * U[:,2],
Severity: Major
Found in src/qinfer/tests/test_utils.py and 1 other location - About 1 hr to fix
src/qinfer/tests/test_utils.py on lines 123..123

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @property
    def max(self):
        """
        Returns the maximum value of the domain.
Severity: Major
Found in src/qinfer/domains.py and 1 other location - About 1 hr to fix
src/qinfer/domains.py on lines 447..454

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 40.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Function plot_rebit_posterior has 9 arguments (exceeds 4 allowed). Consider refactoring.
Open

def plot_rebit_posterior(updater, prior=None, true_state=None, n_std=3, rebit_axes=REBIT_AXES, true_size=250,
Severity: Major
Found in src/qinfer/tomography/plotting_tools.py - About 1 hr to fix

    Function design_expparams_field has 9 arguments (exceeds 4 allowed). Consider refactoring.
    Open

        def design_expparams_field(self,
    Severity: Major
    Found in src/qinfer/expdesign.py - About 1 hr to fix

      Function perf_test has 9 arguments (exceeds 4 allowed). Consider refactoring.
      Open

      def perf_test(
      Severity: Major
      Found in src/qinfer/perf_testing.py - About 1 hr to fix

        Function hypothetical_update has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
        Open

            def hypothetical_update(self, outcomes, expparams, return_likelihood=False, return_normalization=False):
        # TODO: consolidate code with SMCUpdater by breaking update logic
        #       into private method.

        # It's "hypothetical", don't want to overwrite old weights yet!
        Severity: Minor
        Found in src/qinfer/smc.py - About 1 hr to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def model(self):
        """
        Returns (a fixed) instance of the concrete Model class being tested.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 247..256
        src/qinfer/tests/base_test.py on lines 264..273
        src/qinfer/tests/base_test.py on lines 498..507
        src/qinfer/tests/base_test.py on lines 515..524
        src/qinfer/tests/base_test.py on lines 532..541

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def good_values(self):
        """
        Returns (a fixed) list of values in the domain.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 230..239
        src/qinfer/tests/base_test.py on lines 247..256
        src/qinfer/tests/base_test.py on lines 264..273
        src/qinfer/tests/base_test.py on lines 498..507
        src/qinfer/tests/base_test.py on lines 532..541

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def domain(self):
        """
        Returns (a fixed) instance of the concrete Model class being tested.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 230..239
        src/qinfer/tests/base_test.py on lines 247..256
        src/qinfer/tests/base_test.py on lines 264..273
        src/qinfer/tests/base_test.py on lines 515..524
        src/qinfer/tests/base_test.py on lines 532..541

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def prior(self):
        """
        Returns (a fixed) instance of the prior to be used while testing the model.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 230..239
        src/qinfer/tests/base_test.py on lines 264..273
        src/qinfer/tests/base_test.py on lines 498..507
        src/qinfer/tests/base_test.py on lines 515..524
        src/qinfer/tests/base_test.py on lines 532..541

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Function format_uncertainty has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
        Open

        def format_uncertainty(value, uncertianty, scinotn_break=4):
    """
    Given a value and its uncertianty, format as a LaTeX string
    for pretty-printing.
        Severity: Minor
        Found in src/qinfer/utils.py - About 1 hr to fix

        Cognitive Complexity

        Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

        A method's cognitive complexity is based on a few simple rules:

        • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
        • Code is considered more complex for each "break in the linear flow of the code"
        • Code is considered more complex when "flow breaking structures are nested"

        Further reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def expparams(self):
        """
        Returns (a fixed) set of expparams to be used while testing the model.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 230..239
        src/qinfer/tests/base_test.py on lines 247..256
        src/qinfer/tests/base_test.py on lines 498..507
        src/qinfer/tests/base_test.py on lines 515..524
        src/qinfer/tests/base_test.py on lines 532..541

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 6 locations. Consider refactoring.
        Open

            @property
    def bad_values(self):
        """
        Returns (a fixed) list of values not in the domain.
        """
        Severity: Major
        Found in src/qinfer/tests/base_test.py and 5 other locations - About 1 hr to fix
        src/qinfer/tests/base_test.py on lines 230..239
        src/qinfer/tests/base_test.py on lines 247..256
        src/qinfer/tests/base_test.py on lines 264..273
        src/qinfer/tests/base_test.py on lines 498..507
        src/qinfer/tests/base_test.py on lines 515..524

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Similar blocks of code found in 2 locations. Consider refactoring.
        Open

                    x_opt, f_opt, iters, func_calls, warnflag = opt.fmin(
                objective_function, guess[0][field],
        Severity: Major
        Found in src/qinfer/expdesign.py and 1 other location - About 1 hr to fix
        src/qinfer/expdesign.py on lines 366..367

        Duplicated Code

        Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

        Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

        When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

        Tuning

        This issue has a mass of 39.

        We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

        The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

        If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

        See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

        Refactorings

        Further Reading

        Severity
        Category
        Status
        Source
        Language