SiLeBAT/FSK-Lab

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 *
 * Contributors:
 *     Department Biological Safety - BfR
 *******************************************************************************/
package de.bund.bfr.knime.foodprocess.view;
 
import java.util.ArrayList;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
 
import org.knime.core.node.DataAwareNodeDialogPane;
import org.knime.core.node.InvalidSettingsException;
import org.knime.core.node.NodeSettingsRO;
import org.knime.core.node.NodeSettingsWO;
import org.knime.core.node.NotConfigurableException;
import org.knime.core.node.defaultnodesettings.DefaultNodeSettingsPane;
import org.knime.core.node.port.PortObject;
 
import de.bund.bfr.knime.pcml.node.pcmltotable.PCMLDataTable;
import de.bund.bfr.knime.pcml.port.PCMLPortObject;
import de.bund.bfr.knime.pmm.common.XmlConverter;
import de.bund.bfr.knime.util.NameAndDbId;
import de.bund.bfr.pcml10.PCMLDocument;
 
/**
 * <code>NodeDialog</code> for the "View" Node.
 * 
 * 
 * This node dialog derives from {@link DefaultNodeSettingsPane} which allows
 * creation of a simple dialog with standard components. If you need a more
 * complex dialog please derive directly from
 * {@link org.knime.core.node.NodeDialogPane}.
 * 
 * @author Christian Thoens
 */
public class ViewNodeDialog extends DataAwareNodeDialogPane {
 
    private ViewUi viewUi;
 
    /**
     * New pane for configuring the View node.
     */
    protected ViewNodeDialog() {
        viewUi = new ViewUi();
        addTab("Options", viewUi);
    }
 
Method `sortCols` has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.
Refactor this method to reduce its Cognitive Complexity from 22 to the 15 allowed.
    private Map<NameAndDbId, Integer> sortCols(Map<NameAndDbId, Integer> columns) {
        Map<NameAndDbId, Integer> sortedColumns = new LinkedHashMap<NameAndDbId, Integer>();
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isAgent(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isTemperature(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isPH(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isAW(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isPressure(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (JCheckboxWithObject.isMatrix(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        for (NameAndDbId col : columns.keySet()) {
            if (!sortedColumns.containsKey(col) && JCheckboxWithObject.isWithUnit(col.getName())) sortedColumns.put(col, columns.get(col));
        }
        return sortedColumns;
    }
Method `loadSettingsFrom` has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.
Method `loadSettingsFrom` has 34 lines of code (exceeds 25 allowed). Consider refactoring.
    @Override
    protected void loadSettingsFrom(NodeSettingsRO settings,
            PortObject[] inObjects) throws NotConfigurableException { 
        PCMLPortObject pcmlPortObject = (PCMLPortObject) inObjects[0];
        PCMLDocument pcmlDoc = pcmlPortObject.getPcmlDoc();
 
        viewUi.setDoc(pcmlDoc);
 
        
        viewUi.getJCheckBoxListPanel().getDefaultListModel().removeAllElements();
        Map<NameAndDbId, Integer> columns = PCMLDataTable.createColumnMap(pcmlDoc);
        Map<NameAndDbId, Integer> sortedColumns = sortCols(columns);
        for (NameAndDbId col : sortedColumns.keySet()) {
            JCheckboxWithObject cbwo = new JCheckboxWithObject(col.getName());
            viewUi.getJCheckBoxListPanel().getDefaultListModel().addElement(cbwo);
        }
 
        try {
            if (settings.containsKey(ViewNodeModel.CFG_XUNITS) && settings.getString(ViewNodeModel.CFG_XUNITS) != null) viewUi.getXUnits().setSelectedItem(settings.getString(ViewNodeModel.CFG_XUNITS));
            else viewUi.getXUnits().setSelectedIndex(2);
            
            if (settings.containsKey(ViewNodeModel.CFG_EQUIDISTANT)) viewUi.setEquidistantProcesses(settings.getBoolean(ViewNodeModel.CFG_EQUIDISTANT));
            
            if (settings.containsKey(ViewNodeModel.CFG_PLOTLINES)) {
                viewUi.setPlotLines(settings.getBoolean(ViewNodeModel.CFG_PLOTLINES));
            }
            
            if (settings.containsKey(ViewNodeModel.CFG_PLOTPOINTS)) {
                viewUi.setPlotPoints(settings.getBoolean(ViewNodeModel.CFG_PLOTPOINTS));
            }
 
            List<String> list = XmlConverter.xmlToObject(settings.getString(ViewNodeModel.CFG_USEDPARAMETERS), new ArrayList<String>());
 
            viewUi.getJCheckBoxListPanel().getJCheckBoxList().deselectAll();
            for (String cond : list) {
                for (int i=0;i<viewUi.getJCheckBoxListPanel().getJCheckBoxList().getModel().getSize();i++) {
                    JCheckboxWithObject checkbox = viewUi.getJCheckBoxListPanel().getJCheckBoxList().getModel().getElementAt(i); 
                    if (checkbox.getObject().equals(cond)) {
                        checkbox.setSelected(true);
                    }
                }
            }
 
        }
        catch (InvalidSettingsException e) {
        }
        viewUi.createChart();
    }
 
    @Override
    protected void saveSettingsTo(NodeSettingsWO settings)
            throws InvalidSettingsException {
        if (viewUi.getJCheckBoxListPanel().getJCheckBoxList().getSelections().size() == 0) {
            throw new InvalidSettingsException("List of conditions cannot be empty");
        }
        settings.addString(ViewNodeModel.CFG_USEDPARAMETERS, XmlConverter.objectToXml(viewUi.getJCheckBoxListPanel().getJCheckBoxList().getSelections()));
 
        
        settings.addString(ViewNodeModel.CFG_XUNITS, viewUi.getXUnits().getSelectedItem().toString());
        settings.addBoolean(ViewNodeModel.CFG_EQUIDISTANT, viewUi.isEquidistantProcesses());
        settings.addBoolean(ViewNodeModel.CFG_PLOTLINES, viewUi.isPlotLines());
        settings.addBoolean(ViewNodeModel.CFG_PLOTPOINTS, viewUi.isPlotPoints());
    }
}