SiLeBAT/FSK-Lab

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<?eclipse version="3.0"?>

<plugin>
  <extension point="org.knime.workbench.repository.nodes">
    <!-- PdfKeeper -->
    <node category-path="/pmmlab"
      factory-class="de.bund.bfr.knime.pmm.pdfkeeper.PdfKeeperNodeFactory"/>
      
    <!-- Converters -->
    <!-- XML To Table -->
    <node category-path="/pmmlab/converters"
      factory-class="de.bund.bfr.knime.pmm.xml2table.XML2TableNodeFactory"/>
    
    <!-- Editors -->
    <!-- DB Data Deleter -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.dbdelete.DatabaseDeleteNodeFactory"/>
    <!-- Model Creator -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.manualmodelconf.ManualModelConfNodeFactory"/>
    <!-- Model Editor -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.manualmodelconf.ManualModelEditorNodeFactory"/>
    <!-- Formula Creator -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.manualmodelconf.ManualFormulaCreatorNodeFactory"/>
    <!-- Data Editor -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.microbialdataedit.MicrobialDataEditNodeFactory"/>
    <!-- Data Creator -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.timeseriescreator.TimeSeriesCreatorNodeFactory" />
    <!-- JavaScript Editor -->
    <node category-path="/pmmlab/editors"
      factory-class="de.bund.bfr.knime.pmm.editor.ModelEditorNodeFactory"/>

    <!-- Model Fitting -->
    <!-- PMM Joiner -->
    <node category-path="/pmmlab/fitting"
      factory-class="de.bund.bfr.knime.pmm.modelanddatajoiner.ModelAndDataJoinerNodeFactory"/>
    <!-- Model Fitting -->
    <node category-path="/pmmlab/fitting"
      factory-class="de.bund.bfr.knime.pmm.modelestimation.ModelEstimationNodeFactory"/>
    
    <!-- Readers -->
    <!-- ComBase Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.combaseio.CombaseReaderNodeFactory"/>
    <!-- Model Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.estimatedmodelreader.EstimatedModelReaderNodeFactory"/>
    <!-- Formula Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.modelcatalogreader.ModelCatalogReaderNodeFactory"/>
    <!-- Data Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.timeseriesreader.TimeSeriesReaderNodeFactory" />
    <!-- XLS Model Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.xlsmodelreader.XLSModelReaderNodeFactory" />
    <!-- XLS Data Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.xlstimeseriesreader.XLSTimeSeriesReaderNodeFactory" />
    <!-- NuML Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.numl.NuMLReaderNodeFactory"/>
    <!-- OpenFSMR Converter -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.openfsmr.OpenFSMRConverterNodeFactory"/>
    <!-- SBML Reader -->
    <node category-path="/pmmlab/reader"
      factory-class="de.bund.bfr.knime.pmm.sbmlreader.SBMLReaderNodeFactory"/>
    <node category-path="/pmmlab/reader" deprecated="true"
      factory-class="de.bund.bfr.knime.pmm.pmfreader.PMFXReaderNodeFactory"/>
      <node category-path="/pmmlab/reader" deprecated="true"
        factory-class="de.bund.bfr.knime.pmm.pmfreader.PMFReaderNodeFactory"/>
      <node category-path="/pmmlab/reader" deprecated="true"
        factory-class="de.bund.bfr.knime.pmm.pmfxreader.PMFXReaderNodeFactory" />
      <node category-path="/pmmlab/reader" deprecated="false"
        factory-class="de.bund.bfr.knime.pmm.pmfreader.fsk.NodeFactory" />

    <!-- Selectors & Viewers -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.dataviewandselect.DataViewAndSelectNodeFactory"/>
    <!-- Fitted Parameter View -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.fittedparameterview.FittedParameterViewNodeFactory"/>
    <!-- Tertiary Model Selection -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.modelselectiontertiary.ModelSelectionTertiaryNodeFactory"/>
    <!-- Predictor View -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.predictorview.PredictorViewNodeFactory"/>
    <!-- Predictor View JS -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.js.modelplotter.modern.ModelPlotterNodeFactory"/>
    <!-- Predictor View JS (deprecated) -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.js.modelplotter.ModelPlotterNodeFactory"/>
    <!-- Secondary Predictor View -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.secondarypredictorview.SecondaryPredictorViewNodeFactory" />
    <!-- Primary model selection -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.primarymodelviewandselect.PrimaryModelViewAndSelectNodeFactory" />
    <!-- Secondary Model View -->
    <node category-path="/pmmlab/views"
      factory-class="de.bund.bfr.knime.pmm.secondarymodelanddataview.SecondaryModelAndDataViewNodeFactory" />

    <!-- Writers -->
    <node category-path="/pmmlab/writer"
      factory-class="de.bund.bfr.knime.pmm.combaseio.CombaseWriterNodeFactory"/>
    <!-- Formula Writer -->
    <node category-path="/pmmlab/writer"
      factory-class="de.bund.bfr.knime.pmm.modelcatalogwriter.ModelCatalogWriterNodeFactory"/>
    <!-- Model Writer -->
    <node category-path="/pmmlab/writer"
      factory-class="de.bund.bfr.knime.pmm.estimatedmodelwriter.EstimatedModelWriterNodeFactory"/>
    <!-- Data Writer -->
    <node category-path="/pmmlab/writer"
      factory-class="de.bund.bfr.knime.pmm.timeserieswriter.TimeSeriesWriterNodeFactory" />
    <!-- SBML Writer -->
    <node category-path="/pmmlab/writer" deprecated="true"
      factory-class="de.bund.bfr.knime.pmm.sbmlwriter.SBMLWriterNodeFactory" />
    <node category-path="/pmmlab/writer" deprecated="true" factory-class="de.bund.bfr.knime.pmm.pmfwriter.PMFXWriterNodeFactory"/>
      <node category-path="/pmmlab/writer" deprecated="true" factory-class="de.bund.bfr.knime.pmm.pmfwriter.PMFWriterNodeFactory"/>
      <node category-path="/pmmlab/writer" deprecated="true" factory-class="de.bund.bfr.knime.pmm.pmfxwriter.PMFXWriterNodeFactory"/>
      <node category-path="/pmmlab/writer" deprecated="false" factory-class="de.bund.bfr.knime.pmm.pmfwriter.fsk.NodeFactory" />
  </extension>
  
  <extension point="org.knime.workbench.repository.metanode">
    <PersistedMetaNode
      category-path="/pmmlab/reader"
      expert-flag="false"
      icon="metanode_templates/Variable Data Reader.png"
      id="de.bund.bfr.knime.pmm.xlstimeseriesreader.variabledatareader"
      name="Variable Data Reader"
      workflowDir="metanode_templates/Variable Data Reader/">
    </PersistedMetaNode>
  </extension>
  

  <extension point="org.knime.js.core.javascriptComponents">
    <javascriptComponent
      getComponentValue-method-name="getComponentValue"
      implementationBundleID="de.bund.bfr.knime.pmm.js.modelplotter.modern.bundle"
      init-method-name="init"
      javascriptComponentID="de.bund.bfr.knime.pmm.js.modelplotter.modern"
      name="Model Plotter"
      namespace="pmm_plotter"
      setValidationError-method-name="setValidationError"
      validate-method-name="validate" />

    <javascriptComponent
      getComponentValue-method-name="getComponentValue"
      implementationBundleID="de.bund.bfr.knime.pmm.js.modelplotter.bundle"
      init-method-name="init"
      javascriptComponentID="de.bund.bfr.knime.pmm.js.modelplotter"
      name="Model Plotter (deprecated)"
      namespace="bfr_model_plotter"
      setValidationError-method-name="setValidationError"
      validate-method-name="validate" />
      
    <javascriptComponent
      getComponentValue-method-name="value"
      implementationBundleID="de.bund.bfr.knime.pmm.editor.bundle"
      init-method-name="init"
      javascriptComponentID="de.bund.bfr.knime.pmm.editor"
      name="JavaScript Editor"
      namespace="js_editor">
    </javascriptComponent>
  </extension>
  
  
  <extension point="org.knime.js.core.webResources">
    
    <webResourceBundle debug="true" name="Function Plot" version="1.0.0"
      webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.function-plot">
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/function-plot.js"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/function-plot.js">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/function-plot.js"
        type="JAVASCRIPT" />
      <webDependency webResourceBundleID="D3_3.5.5" />
      <webDependency webResourceBundleID="mathjs_3.10.0" />
    </webResourceBundle>
    
    <!-- TODO:
      - Replace jQuery UI resource with dependency from org.knime.js.core
      - Keep resources for: jquery-ui.structure.css, jquery-ui.theme.css??, images
        (maybe jquery-ui.theme.css is already included in the dependency -> need to check)
    -->
    <webResourceBundle debug="true" name="jQuery UI" version="1.0.0"
      webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.jquery-ui">
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js"
        type="JAVASCRIPT">
      </importResource>
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.css"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.css">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.css"
        type="CSS">
      </importResource>
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.structure.css"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.structure.css">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.structure.css"
        type="CSS">
      </importResource>
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.theme.css"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.theme.css">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.theme.css"
        type="CSS">
      </importResource>
      <webDependency webResourceBundleID="jQuery_1.11.0" />
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/images/"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/images/">
      </webResource>
    </webResourceBundle>
    
    <webResourceBundle debug="true" name="PMM Plotter" version="1.0.0"
      webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.modern.bundle">
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/pmm-plotter.js"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/pmm-plotter.js">
      </webResource>
      <webDependency webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.function-plot" />
      <webDependency webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.jquery-ui" />
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/pmm-plotter.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>
    
    <!-- for depricated node -->
    <webResourceBundle debug="true" name="Model Plotter" version="1.0.0"
      webResourceBundleID="de.bund.bfr.knime.pmm.js.modelplotter.bundle">
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/js/modelplotter/knime-model-plotter.js"
        relativePathTarget="de/bund/bfr/knime/pmm/js/modelplotter/knime-model-plotter.js">
      </webResource>
      <webDependency webResourceBundleID="jsxgraph_0.99.3" />
      <importResource
        relativePath="de/bund/bfr/knime/pmm/js/modelplotter/knime-model-plotter.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>
   
    <webResourceBundle
      debug="true"
      name="JavaScript Editor"
      usesDefine="false"
      version="1.0.0"
      webResourceBundleID="de.bund.bfr.knime.pmm.editor.bundle">
      <webResource
        relativePathSource="js-src/de/bund/bfr/knime/pmm/editor/"
        relativePathTarget="de/bund/bfr/knime/pmm/editor/">
      </webResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/editor/editor.js"
        type="JAVASCRIPT">
      </importResource>
      <importResource
        relativePath="de/bund/bfr/knime/pmm/editor/editor.css"
        type="CSS">
      </importResource>
      <webDependency webResourceBundleID="select2_4.0.3" />
      <webDependency webResourceBundleID="toastr_2.1.3" />
      <webDependency webResourceBundleID="jsep_0.3.1" />
      <webDependency webResourceBundleID="jQuery_2.1.4" />
      <webDependency webResourceBundleID="bootstrap_3.3.6" />
      <webDependency webResourceBundleID="bootstrap-table_1.11.1" />
      <webDependency webResourceBundleID="bootstrap-editable_1.5.1" />
    </webResourceBundle>
    
    <!-- bootstrap-editable (DEBUG) -->
    <webResourceBundle
      debug="true"
      name="bootstrap-editable 1.5.1"
      usesDefine="false"
      version="1.5.1"
      webResourceBundleID="bootstrap-editable_1.5.1_Debug">
      <webResource relativePathSource="js-lib/bootstrap-editable/1_5_1/debug/" />
      <webResource relativePathSource="js-lib/bootstrap-editable/1_5_1/img" />
      <importResource
        relativePath="js-lib/bootstrap-editable/1_5_1/debug/bootstrap-editable.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/bootstrap-editable/1_5_1/debug/bootstrap-editable.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="bootstrap_3.3.6_Debug" />
    </webResourceBundle>
      
    <!-- bootstrap-editable (MIN) -->
    <webResourceBundle
      debug="false"
      name="bootstrap-editable 1.5.1"
      usesDefine="false"
      version="1.5.1"
      webResourceBundleID="bootstrap-editable_1.5.1">
      <webResource relativePathSource="js-lib/bootstrap-editable/1_5_1/min" />
      <webResource relativePathSource="js-lib/bootstrap-editable/1_5_1/img" />
      <importResource
        relativePath="js-lib/bootstrap-editable/1_5_1/min/bootstrap-editable.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/bootstrap-editable/1_5_1/min/bootstrap-editable.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="bootstrap_3.3.6" />
    </webResourceBundle>
      
    <!-- bootstrap-table (DEBUG) -->
    <webResourceBundle
      debug="true"
      name="bootstrap-table 1.11.1"
      usesDefine="false"
      version="1.11.1"
      webResourceBundleID="bootstrap-table_1.11.1_Debug">
      <webResource relativePathSource="js-lib/bootstrap-table/1_11_1/debug" />
      <importResource
        relativePath="js-lib/bootstrap-table/1_11_1/debug/css/bootstrap-table.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/bootstrap-table/1_11_1/debug/js/bootstrap-table.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="bootstrap_3.3.6_Debug" />
    </webResourceBundle>
      
    <!-- bootstrap-table (MIN) -->
    <webResourceBundle
      debug="false"
      name="bootstrap-table 1.11.1"
      usesDefine="false"
      version="1.11.1"
      webResourceBundleID="bootstrap-table_1.11.1">
      <webResource relativePathSource="js-lib/bootstrap-table/1_11_1/min" />
      <importResource
        relativePath="js-lib/bootstrap-table/1_11_1/min/css/bootstrap-table.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/bootstrap-table/1_11_1/min/js/bootstrap-table.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="bootstrap_3.3.6" />
    </webResourceBundle>
    
    <!-- jsep (DEBUG) -->
    <webResourceBundle
      debug="true"
      name="jsep 0.3.1"
      usesDefine="false"
      version="0.3.1"
      webResourceBundleID="jsep_0.3.1_Debug">
      <webResource relativePathSource="js-lib/jsep/0_3_1/debug" />
      <importResource
        relativePath="js-lib/jsep/0_3_1/debug/js/jsep.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>
    
    <!-- jsep (MIN) -->
    <webResourceBundle
      debug="false"
      name="jsep 0.3.1"
      usesDefine="false"
      version="0.3.1"
      webResourceBundleID="jsep_0.3.1">
      <webResource relativePathSource="js-lib/jsep/0_3_1/min" />
      <importResource
        relativePath="js-lib/jsep/0_3_1/min/js/jsep.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>

    <!-- select2 (DEBUG) -->
    <webResourceBundle
      debug="true"
      name="select2 4.0.3"
      usesDefine="false"
      version="4.0.3"
      webResourceBundleID="select2_4.0.3_Debug">
      <webResource relativePathSource="js-lib/select2/4_0_3/debug/" />
      <importResource
        relativePath="js-lib/select2/4_0_3/debug/css/select2.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/select2/4_0_3/debug/js/select2.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="jQuery_2.1.4_Debug" />
    </webResourceBundle>
    
    <!-- select2 (MIN) -->
    <webResourceBundle
      debug="false"
      name="select2 4.0.3"
      usesDefine="false"
      version="4.0.3"
      webResourceBundleID="select2_4.0.3">
      <webResource relativePathSource="js-lib/select2/4_0_3/min/" />
      <importResource
        relativePath="js-lib/select2/4_0_3/min/css/select2.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/select2/4_0_3/min/js/select2.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="jQuery_2.1.4" />
    </webResourceBundle>
    
    <!-- toastr (DEBUG) -->
    <webResourceBundle
      debug="true"
      name="toastr 2.1.3"
      usesDefine="false"
      version="2.1.3"
      webResourceBundleID="toastr_2.1.3_Debug">
      <webResource relativePathSource="js-lib/toastr/2_1_3/debug/" />
      <importResource
        relativePath="js-lib/toastr/2_1_3/debug/css/toastr.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/toastr/2_1_3/debug/js/toastr.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="jQuery_2.1.4_Debug" />
    </webResourceBundle>
    
    <!-- toastr (MIN) -->
    <webResourceBundle
      debug="false"
      name="toastr 2.1.3"
      usesDefine="false"
      version="2.1.3"
      webResourceBundleID="toastr_2.1.3">
      <webResource relativePathSource="js-lib/toastr/2_1_3/min/" />
      <importResource
        relativePath="js-lib/toastr/2_1_3/min/css/toastr.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/toastr/2_1_3/min/js/toastr.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="jQuery_2.1.4" />
    </webResourceBundle>

    <!-- mathjs (debug) -->
    <webResourceBundle
      debug="true"
      name="Math JS"
      version="3.10.0"
      webResourceBundleID="mathjs_3.10.0_Debug">
      <webResource
        relativePathSource="js-lib/mathjs/3_10_0/debug/"
        relativePathTarget="js-lib/mathjs/3_10_0/debug/">
      </webResource>
      <importResource
        relativePath="js-lib/mathjs/3_10_0/debug/js/math.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>

    <!-- mathjs (min) -->
    <webResourceBundle
      debug="false"
      name="Math JS"
      version="3.10.0"
      webResourceBundleID="mathjs_3.10.0">
      <webResource
        relativePathSource="js-lib/mathjs/3_10_0/min/"
        relativePathTarget="js-lib/mathjs/3_10_0/min/">
      </webResource>
      <importResource
        relativePath="js-lib/mathjs/3_10_0/min/js/math.js"
        type="JAVASCRIPT">
      </importResource>
    </webResourceBundle>
    
    <!-- jsxgraph (min) -->
    <webResourceBundle
      debug="false"
      name="jsxgraph 0.99.3"
      usesDefine="false"
      version="0.99.3"
      webResourceBundleID="jsxgraph_0.99.3">
      <webResource relativePathSource="js-lib/jsxgraph/0_99_3/min/" />
      <importResource
        relativePath="js-lib/jsxgraph/0_99_3/min/css/jsxgraph.css"
        type="CSS">
      </importResource>
      <importResource
        relativePath="js-lib/jsxgraph/0_99_3/min/js/jsxgraphcore.js"
        type="JAVASCRIPT">
      </importResource>
      <webDependency webResourceBundleID="mathjs_3.10.0" />
    </webResourceBundle>
  </extension>
</plugin>