SiLeBAT/FSK-Lab

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de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/predictorview/PredictorViewNodeModel.java

Summary

Maintainability
D
2 days
Test Coverage

Method createDataTuple has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.
Open

    private KnimeTuple createDataTuple(TableReader reader, String id) {
        KnimeTuple dataTuple;
        KnimeTuple tuple = reader.getTupleMap().get(id);
        Plotable plotable = reader.getPlotables().get(id);
        Map<String, List<Double>> conditions = plotable.getFunctionArguments();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createDataTuple has 87 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private KnimeTuple createDataTuple(TableReader reader, String id) {
        KnimeTuple dataTuple;
        KnimeTuple tuple = reader.getTupleMap().get(id);
        Plotable plotable = reader.getPlotables().get(id);
        Map<String, List<Double>> conditions = plotable.getFunctionArguments();

Method execute has a Cognitive Complexity of 22 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)
            throws Exception {
        DataTable table = (DataTable) inObjects[0];
        TableReader reader = new TableReader(getTuples(table),

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File PredictorViewNodeModel.java has 292 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by

Method execute has 64 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)
            throws Exception {
        DataTable table = (DataTable) inObjects[0];
        TableReader reader = new TableReader(getTuples(table),

Method getTuples has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.
Open

    public static List<KnimeTuple> getTuples(DataTable table) {
        
        boolean isTertiaryModel = SchemaFactory.createM12Schema().conforms(
                table);
        boolean containsData = SchemaFactory.createDataSchema().conforms(table);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                        if ((min != null && value < min)
                                || (max != null && value > max)) {
                            setWarningMessage(entry.getKey() + " = " + value
                                    + " is not in range " + min + " -> " + max);
                        }

Refactor this method to reduce its Cognitive Complexity from 22 to the 15 allowed.
Open

    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)

Cognitive Complexity is a measure of how hard the control flow of a method is to understand. Methods with high Cognitive Complexity will be difficult to maintain.

See

Refactor this method to reduce its Cognitive Complexity from 27 to the 15 allowed.
Open

    private KnimeTuple createDataTuple(TableReader reader, String id) {

Cognitive Complexity is a measure of how hard the control flow of a method is to understand. Methods with high Cognitive Complexity will be difficult to maintain.

See

Add a nested comment explaining why this method is empty, throw an UnsupportedOperationException or complete the implementation.
Open

    protected void reset() {

There are several reasons for a method not to have a method body:

  • It is an unintentional omission, and should be fixed to prevent an unexpected behavior in production.
  • It is not yet, or never will be, supported. In this case an UnsupportedOperationException should be thrown.
  • The method is an intentionally-blank override. In this case a nested comment should explain the reason for the blank override.

Noncompliant Code Example

public void doSomething() {
}

public void doSomethingElse() {
}

Compliant Solution

@Override
public void doSomething() {
  // Do nothing because of X and Y.
}

@Override
public void doSomethingElse() {
  throw new UnsupportedOperationException();
}

Exceptions

Default (no-argument) constructors are ignored when there are other constructors in the class, as are empty methods in abstract classes.

public abstract class Animal {
  void speak() {  // default implementation ignored
  }
}

Add a nested comment explaining why this method is empty, throw an UnsupportedOperationException or complete the implementation.
Open

    protected void loadInternals(final File internDir,

There are several reasons for a method not to have a method body:

  • It is an unintentional omission, and should be fixed to prevent an unexpected behavior in production.
  • It is not yet, or never will be, supported. In this case an UnsupportedOperationException should be thrown.
  • The method is an intentionally-blank override. In this case a nested comment should explain the reason for the blank override.

Noncompliant Code Example

public void doSomething() {
}

public void doSomethingElse() {
}

Compliant Solution

@Override
public void doSomething() {
  // Do nothing because of X and Y.
}

@Override
public void doSomethingElse() {
  throw new UnsupportedOperationException();
}

Exceptions

Default (no-argument) constructors are ignored when there are other constructors in the class, as are empty methods in abstract classes.

public abstract class Animal {
  void speak() {  // default implementation ignored
  }
}

Add a nested comment explaining why this method is empty, throw an UnsupportedOperationException or complete the implementation.
Open

    protected void saveInternals(final File internDir,

There are several reasons for a method not to have a method body:

  • It is an unintentional omission, and should be fixed to prevent an unexpected behavior in production.
  • It is not yet, or never will be, supported. In this case an UnsupportedOperationException should be thrown.
  • The method is an intentionally-blank override. In this case a nested comment should explain the reason for the blank override.

Noncompliant Code Example

public void doSomething() {
}

public void doSomethingElse() {
}

Compliant Solution

@Override
public void doSomething() {
  // Do nothing because of X and Y.
}

@Override
public void doSomethingElse() {
  throw new UnsupportedOperationException();
}

Exceptions

Default (no-argument) constructors are ignored when there are other constructors in the class, as are empty methods in abstract classes.

public abstract class Animal {
  void speak() {  // default implementation ignored
  }
}

Add a nested comment explaining why this method is empty, throw an UnsupportedOperationException or complete the implementation.
Open

    protected void validateSettings(final NodeSettingsRO settings)

There are several reasons for a method not to have a method body:

  • It is an unintentional omission, and should be fixed to prevent an unexpected behavior in production.
  • It is not yet, or never will be, supported. In this case an UnsupportedOperationException should be thrown.
  • The method is an intentionally-blank override. In this case a nested comment should explain the reason for the blank override.

Noncompliant Code Example

public void doSomething() {
}

public void doSomethingElse() {
}

Compliant Solution

@Override
public void doSomething() {
  // Do nothing because of X and Y.
}

@Override
public void doSomethingElse() {
  throw new UnsupportedOperationException();
}

Exceptions

Default (no-argument) constructors are ignored when there are other constructors in the class, as are empty methods in abstract classes.

public abstract class Animal {
  void speak() {  // default implementation ignored
  }
}

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    public static List<KnimeTuple> getTuples(DataTable table) {
        
        boolean isTertiaryModel = SchemaFactory.createM12Schema().conforms(
                table);
        boolean containsData = SchemaFactory.createDataSchema().conforms(table);
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/modelplotter/ModelPlotterNodeModel.java on lines 341..363

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 104.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @Override
    protected PortObjectSpec[] configure(PortObjectSpec[] inSpecs)
            throws InvalidSettingsException {
        if (!SchemaFactory.createM1Schema()
                .conforms((DataTableSpec) inSpecs[0])) {
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/dataviewandselect/DataViewAndSelectNodeModel.java on lines 136..147

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 52.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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