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File ProcessModelSheetImporter.java has 485 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata.swagger;

import java.math.BigDecimal;
import java.util.HashMap;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java - About 7 hrs to fix

Function apply has 191 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  Defaults.prototype.apply = function (options) {
    options = $.extend(true, {}, this.defaults, options);

    if (options.dataAdapter == null) {
      if (options.ajax != null) {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/select2/4_0_3/debug/js/select2.js - About 7 hrs to fix

Method convert has a Cognitive Complexity of 49 (exceeds 5 allowed). Consider refactoring.
Open

    private JsonNode convert(JsonNode originalMetadata, Map<String, Object> originalClass,
            Map<String, Object> targetClass) {
          if(originalMetadata == null) {
          return null;
        }
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/ConversionUtils.java - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method retrieveParameter has a Cognitive Complexity of 49 (exceeds 5 allowed). Consider refactoring.
Open

    public static Parameter retrieveParameter(Row row, Map<String, Integer> columns) {

        // Check first mandatory properties
        final Cell idCell = row.getCell(columns.get("id"));
        if (idCell == null || idCell.getCellTypeEnum() == CellType.BLANK) {
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ImporterUtils.java - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setValueAt has a Cognitive Complexity of 49 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public void setValueAt(Object aValue, int rowIndex, int columnIndex) {

      String stringValue = (String) aValue;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.nodes.common/src/de/bund/bfr/knime/fsklab/nodes/common/ui/MetaDataPane.java - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File GeneralInformationImpl.java has 482 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/**
 */
package metadata.impl;

import java.util.Collection;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/GeneralInformationImpl.java - About 7 hrs to fix

Method initComponents has 189 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void initComponents() {
        // JFormDesigner - Component initialization - DO NOT MODIFY  //GEN-BEGIN:initComponents
        dialogPane = new JPanel();
        contentPanel = new JPanel();
        label1 = new JLabel();
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/PlausibleDialog4Krise.java - About 7 hrs to fix

Method check4Updates_176_177 has 189 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    public static void check4Updates_176_177() {
        new GeneralXLSImporter().doImport("/org/hsh/bfr/db/res/Einheiten_140312.xls", null, false);

        DBKernel.sendRequest(
                "ALTER TABLE " + DBKernel.delimitL("Station") + " ADD COLUMN " + DBKernel.delimitL("Serial") + " VARCHAR(16383) BEFORE " + DBKernel.delimitL("Kommentar"), false);
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/UpdateChecker.java - About 7 hrs to fix

Method readFskPortObject has 189 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  private static FskPortObject readFskPortObject(CombineArchive archive, List<String> ListOfPaths,
      int readLevel) throws Exception {
    Map<String, URI> URIS = FSKML.getURIS(1, 0, 12);

    Model model = new Model();
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/reader/ReaderNodeUtil.java - About 7 hrs to fix

Method addNodes has 188 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void addNodes(final Connection conn, final WorkflowManager wfm) throws CoreException {    
        LinkedHashMap<Integer, NodeID> nodesMap = new LinkedHashMap<Integer, NodeID>();
        LinkedHashMap<Integer, Integer> fromMap = new LinkedHashMap<Integer, Integer>();
        LinkedHashMap<Integer, Integer> toMap = new LinkedHashMap<Integer, Integer>();
        //LinkedHashMap<Integer, LinkedHashMap<Integer, Double>> fractionsIn = new LinkedHashMap<Integer, LinkedHashMap<Integer, Double>>();
Severity: Major
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/CreateWorkflow.java - About 7 hrs to fix

Method performExecute has 188 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] performExecute(PortObject[] inObjects, ExecutionContext exec)
      throws Exception {
    String portObjectModelType = "";
    if (inObjects[0] != null) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/editor/FSKEditorJSNodeModel.java - About 7 hrs to fix

PopulationGroup has 53 methods (exceeds 20 allowed). Consider refactoring.
Open

@javax.annotation.Generated(value = "io.swagger.codegen.languages.JavaClientCodegen", date = "2019-07-02T16:22:48.194+02:00")
public class PopulationGroup {
  @SerializedName("name")
  private String name = null;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/PopulationGroup.java - About 7 hrs to fix

File DoseResponseSheetImporter.java has 479 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package metadata.swagger;

import java.math.BigDecimal;
import java.util.HashMap;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java - About 7 hrs to fix

File PmmTimeSeries.java has 479 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/PmmTimeSeries.java - About 7 hrs to fix

Method look4ParentNode has a Cognitive Complexity of 48 (exceeds 5 allowed). Consider refactoring.
Open

    private DefaultMutableTreeNode look4ParentNode(final LinkedHashMap<String, DefaultMutableTreeNode> myCodes, final String code, final int[] cutSystem) {
        DefaultMutableTreeNode result = null;
        String key;
        if (cutSystem == null) {
            for (int i=code.length()-1;i>=0;i--) {
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/dbtree/MyDBTreeModel.java - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method getFunctionSamplePointsErrors has a Cognitive Complexity of 48 (exceeds 5 allowed). Consider refactoring.
Open

    public double[][] getFunctionSamplePointsErrors(String paramX,
            String paramY, String unitX, String unitY, String transformX,
            String transformY, double minX, double maxX, double minY,
            double maxY, Map<String, Integer> choice) throws ConvertException {
        if (function == null) {
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java - About 7 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Study has 52 methods (exceeds 20 allowed). Consider refactoring.
Open

@javax.annotation.Generated(value = "io.swagger.codegen.languages.JavaClientCodegen", date = "2019-07-02T16:22:48.194+02:00")
public class Study {
  @SerializedName("identifier")
  private String identifier = null;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Study.java - About 7 hrs to fix

SettingsHelper has 52 methods (exceeds 20 allowed). Consider refactoring.
Open

public class SettingsHelper {

    protected static final String CFG_SELECTEDIDS = "SelectedIDs";
    protected static final String CFG_COLORS = "Colors";
    protected static final String CFG_SHAPES = "Shapes";
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/primarymodelviewandselect/SettingsHelper.java - About 7 hrs to fix

EmReaderUi has 52 methods (exceeds 20 allowed). Consider refactoring.
Open

public class EmReaderUi extends JPanel {
    /**
     * 
     */
    private static final long serialVersionUID = -7838365860944621209L;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/estimatedmodelreader/EmReaderUi.java - About 7 hrs to fix

Method initComponents has 183 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void initComponents() {
        // JFormDesigner - Component initialization - DO NOT MODIFY  //GEN-BEGIN:initComponents
        panel1 = new JPanel();
        label1 = new JLabel();
        agensIDField = new JTextField();
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/timeseriesreader/MdReaderUi.java - About 7 hrs to fix
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