SiLeBAT/FSK-Lab

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Showing 14,752 of 14,752 total issues

Method retrieveGeneralInformation has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private DataModelGeneralInformation retrieveGeneralInformation(Sheet sheet) {

        DataModelGeneralInformation information = new DataModelGeneralInformation();

        Cell nameCell = sheet.getRow(GENERAL_INFORMATION__NAME).getCell(J);

Method itemStateChanged has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void itemStateChanged(ItemEvent e) {
        if (e.getStateChange() != ItemEvent.SELECTED) {
            return;
        }

Method execute has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)
            throws Exception {
        DataTable table = (DataTable) inObjects[0];
        TableReader reader;

Method initComponents has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void initComponents() {
        // JFormDesigner - Component initialization - DO NOT MODIFY  //GEN-BEGIN:initComponents
        dialogPane = new JPanel();
        contentPanel = new JPanel();
        radioButton1 = new JRadioButton();
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/PlausibleDialog.java - About 2 hrs to fix

Method actionPerformed has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void actionPerformed(final ActionEvent e) {
          final PlausibleDialog pd = new PlausibleDialog(DBKernel.mainFrame); 
          final PlausibleDialog4Krise pd4 = new PlausibleDialog4Krise(DBKernel.mainFrame); 
          if (DBKernel.isKrise) pd4.setVisible(true);
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/actions/PlausibleAction.java - About 2 hrs to fix

Method execute has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    protected BufferedDataTable[] execute(BufferedDataTable[] inData, ExecutionContext exec) throws Exception {

        KnimeSchema schema = null;
        ModelType modelType = null;

Method initComponents has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    private void initComponents() {
        // JFormDesigner - Component initialization - DO NOT MODIFY
        // //GEN-BEGIN:initComponents
        myChartPanel1 = new MyChartPanel();
        scrollPane1 = new JScrollPane();

Method run has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void run() {

        try {
            initDatabase();

Function graticule has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  d3.geo.graticule = function() {
    var x1, x0, X1, X0, y1, y0, Y1, Y0, dx = 10, dy = dx, DX = 90, DY = 360, x, y, X, Y, precision = 2.5;
    function graticule() {
      return {
        type: "MultiLineString",

Function d3_xhr has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function d3_xhr(url, mimeType, response, callback) {
    var xhr = {}, dispatch = d3.dispatch("beforesend", "progress", "load", "error"), headers = {}, request = new XMLHttpRequest(), responseType = null;
    if (d3_window.XDomainRequest && !("withCredentials" in request) && /^(http(s)?:)?\/\//.test(url)) request = new XDomainRequest();
    "onload" in request ? request.onload = request.onerror = respond : request.onreadystatechange = function() {
      request.readyState > 3 && respond();

Function save_parameters has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function save_parameters(model_number) {
        var model = models[model_number];
        model.indeps.indeps = Array();  // independent parameters
        model.params.params = Array();  // constant parameters

Function generate__limitItems has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

module.exports = function generate__limitItems(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
  var $dataLvl = it.dataLevel;
  var $schema = it.schema[$keyword];

Function 31 has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

},{}],31:[function(require,module,exports){
'use strict';
module.exports = function generate_pattern(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;

Function generate_multipleOf has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

module.exports = function generate_multipleOf(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
  var $dataLvl = it.dataLevel;
  var $schema = it.schema[$keyword];

Function generate__limitProperties has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

module.exports = function generate__limitProperties(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
  var $dataLvl = it.dataLevel;
  var $schema = it.schema[$keyword];

Function _buildEvents has 72 lines of code (exceeds 25 allowed). Consider refactoring.
Open

        _buildEvents: function(){
            var events = {
                keyup: $.proxy(function(e){
                    if ($.inArray(e.keyCode, [27, 37, 39, 38, 40, 32, 13, 9]) === -1)
                        this.update();

Similar blocks of code found in 25 locations. Consider refactoring.
Open

    public ModelCategory retrieveModelCategory(Sheet sheet) {
        // Check mandatory properties and throw exception if missing
        if (sheet.getRow(MODEL_CATEGORY__MODEL_CLASS).getCell(J).getCellType() != Cell.CELL_TYPE_STRING) {
            throw new IllegalArgumentException("Missing model class");
        }
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/RAKIPSheetImporter.java on lines 415..441
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java on lines 602..628
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDataModelSheetImporter.java on lines 579..605
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java on lines 531..557
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerExposureSheetImporter.java on lines 607..633
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerGenericSheetImporter.java on lines 606..632
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 592..618
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 597..623
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerQraModelSheetImporter.java on lines 612..638
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerRiskModelSheetImporter.java on lines 609..635
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerSheetImporter.java on lines 314..340
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java on lines 482..508
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java on lines 447..473
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ExposureModelSheetImporter.java on lines 498..524
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 502..528
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 454..480
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/OtherModelSheetImporter.java on lines 474..500
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/PredictiveModelSheetImporter.java on lines 492..518
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 455..481
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/QraModelSheetImporter.java on lines 504..530
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 500..526
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 446..472

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 182.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 25 locations. Consider refactoring.
Open

    public ModelCategory retrieveModelCategory(Sheet sheet) {
        // Check mandatory properties and throw exception if missing
        if (sheet.getRow(MODEL_CATEGORY__MODEL_CLASS).getCell(I).getCellType() != Cell.CELL_TYPE_STRING) {
            throw new IllegalArgumentException("Missing model class");
        }
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java on lines 602..628
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDataModelSheetImporter.java on lines 579..605
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java on lines 531..557
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerExposureSheetImporter.java on lines 607..633
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerGenericSheetImporter.java on lines 606..632
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerOtherModelSheetImporter.java on lines 599..625
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 592..618
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 597..623
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerQraModelSheetImporter.java on lines 612..638
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerRiskModelSheetImporter.java on lines 609..635
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerSheetImporter.java on lines 314..340
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java on lines 482..508
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java on lines 447..473
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ExposureModelSheetImporter.java on lines 498..524
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 502..528
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 454..480
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/OtherModelSheetImporter.java on lines 474..500
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/PredictiveModelSheetImporter.java on lines 492..518
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 455..481
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/QraModelSheetImporter.java on lines 504..530
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 500..526
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 446..472

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 182.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 25 locations. Consider refactoring.
Open

    public ModelCategory retrieveModelCategory(Sheet sheet) {
        // Check mandatory properties and throw exception if missing
        if (sheet.getRow(MODEL_CATEGORY__MODEL_CLASS).getCell(J).getCellType() != Cell.CELL_TYPE_STRING) {
            throw new IllegalArgumentException("Missing model class");
        }
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/RAKIPSheetImporter.java on lines 415..441
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java on lines 602..628
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java on lines 531..557
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerExposureSheetImporter.java on lines 607..633
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerGenericSheetImporter.java on lines 606..632
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerOtherModelSheetImporter.java on lines 599..625
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 592..618
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 597..623
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerQraModelSheetImporter.java on lines 612..638
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerRiskModelSheetImporter.java on lines 609..635
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerSheetImporter.java on lines 314..340
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java on lines 482..508
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java on lines 447..473
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ExposureModelSheetImporter.java on lines 498..524
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 502..528
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 454..480
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/OtherModelSheetImporter.java on lines 474..500
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/PredictiveModelSheetImporter.java on lines 492..518
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 455..481
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/QraModelSheetImporter.java on lines 504..530
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 500..526
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 446..472

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 182.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 25 locations. Consider refactoring.
Open

    public ModelCategory retrieveModelCategory(Sheet sheet) {
        // Check mandatory properties and throw exception if missing
        if (sheet.getRow(MODEL_CATEGORY__MODEL_CLASS).getCell(J).getCellType() != Cell.CELL_TYPE_STRING) {
            throw new IllegalArgumentException("Missing model class");
        }
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/RAKIPSheetImporter.java on lines 415..441
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java on lines 602..628
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDataModelSheetImporter.java on lines 579..605
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java on lines 531..557
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerExposureSheetImporter.java on lines 607..633
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerGenericSheetImporter.java on lines 606..632
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 530..556
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerOtherModelSheetImporter.java on lines 599..625
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 592..618
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 597..623
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerQraModelSheetImporter.java on lines 612..638
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerRiskModelSheetImporter.java on lines 609..635
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerSheetImporter.java on lines 314..340
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ConsumptionModelSheetImporter.java on lines 482..508
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/DoseResponseSheetImporter.java on lines 447..473
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ExposureModelSheetImporter.java on lines 498..524
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/GenericModelSheetImporter.java on lines 502..528
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/HealthModelSheetImporter.java on lines 454..480
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/OtherModelSheetImporter.java on lines 474..500
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/PredictiveModelSheetImporter.java on lines 492..518
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ProcessModelSheetImporter.java on lines 455..481
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/QraModelSheetImporter.java on lines 504..530
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/RiskModelSheetImporter.java on lines 500..526
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/swagger/ToxicologicalModelSheetImporter.java on lines 446..472

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 182.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Severity
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Status
Source
Language