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File LayoutManager.java has 281 lines of code (exceeds 250 allowed). Consider refactoring.
Open

package de.bund.bfr.knime.foodprocess.ui;

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
Severity: Minor
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/LayoutManager.java - About 2 hrs to fix

File Study.java has 280 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 * RAKIP Generic model
 * TODO
 *
 * OpenAPI spec version: 1.0.4
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Study.java - About 2 hrs to fix

Method fire has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    public void fire(final int triggerType, final String triggerName, final String tableName, final Object rowBefore[], final Object rowAfter[]) {
        try {
            if (triggerType == Trigger.INSERT_BEFORE_ROW || triggerType == Trigger.UPDATE_BEFORE_ROW || triggerType == Trigger.DELETE_BEFORE_ROW) {
                if (tableName.equals("Users")) {
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyTrigger.java - About 2 hrs to fix

Method createSBML has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  private static SBMLDocument createSBML(FskPortObject fskObj, CombineArchive archive,
      String ModelId, Map<String, URI> URIS, String filePrefix) throws IOException {
    filePrefix = filePrefix + normalizeName(fskObj) + System.getProperty("file.separator");
    SBMLDocument doc = new SBMLDocument(3, 1);
    doc.addDeclaredNamespace("xmlns:fsk",
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeModel.java - About 2 hrs to fix

Method createSBML has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  private static SBMLDocument createSBML(FskPortObject fskObj, CombineArchive archive,
      String ModelId, Map<String, URI> URIS, String filePrefix) throws IOException {
    filePrefix = filePrefix + normalizeName(fskObj) + System.getProperty("file.separator");
    SBMLDocument doc = new SBMLDocument(3, 1);
    doc.addDeclaredNamespace("xmlns:fsk",
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java - About 2 hrs to fix

Method testConstructors has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Test
    public void testConstructors() {

        // Test fully parameterized constructor
        final LiteratureItem item0 = new LiteratureItem(Type.M, "author", 0, "title", "abstractText", "journal", "volume",
Severity: Major
Found in de.bund.bfr.knime.pmm.common.tests/src/de/bund/bfr/knime/pmm/extendedtable/items/LiteratureItemTest.java - About 2 hrs to fix

Method testConstructors has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Test
    public void testConstructors() {

        // Test fully parameterized constructor
        final LiteratureItem item0 = new LiteratureItem("author", 0, "title", "abstractText", "journal", "volume", "issue", 0,
Severity: Major
Found in de.bund.bfr.knime.pmm.common.tests/src/de/bund/bfr/knime/pmm/common/LiteratureItemTest.java - About 2 hrs to fix

Function basicToken has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function basicToken(stream,state){
    var cur = '';
    var ch = stream.next();
    // comment
    if (state.blockComment) {
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/asterisk/asterisk.js - About 2 hrs to fix

Function axis has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function axis(g) {
      g.each(function() {
        var g = d3.select(this);
        var ticks = tickValues == null ? scale.ticks ? scale.ticks.apply(scale, tickArguments_) : scale.domain() : tickValues, tickFormat = tickFormat_ == null ? scale.tickFormat ? scale.tickFormat.apply(scale, tickArguments_) : d3_identity : tickFormat_, tick = g.selectAll(".tick").data(ticks, scale), tickEnter = tick.enter().insert("g", ".domain").attr("class", "tick").style("opacity", 1e-6), tickExit = d3.transition(tick.exit()).style("opacity", 1e-6).remove(), tickUpdate = d3.transition(tick).style("opacity", 1), tickTransform;
        var range = d3_scaleRange(scale), path = g.selectAll(".domain").data([ 0 ]), pathUpdate = (path.enter().append("path").attr("class", "domain"),
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/d3.js - About 2 hrs to fix

Function _keydown has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _keydown: function( event ) {
        var match, prev, character, skip,
            preventDefault = true;

        switch ( event.keyCode ) {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js - About 2 hrs to fix

Function generate_oneOf has 68 lines of code (exceeds 25 allowed). Consider refactoring.
Open

module.exports = function generate_oneOf(it, $keyword, $ruleType) {
  var out = ' ';
  var $lvl = it.level;
  var $dataLvl = it.dataLevel;
  var $schema = it.schema[$keyword];
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js - About 2 hrs to fix

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                for (int i = 0; i < paramList.size() - 1; i++) {
                    for (int j = i + 1; j < paramList.size(); j++) {
                        Object obj1 = parser.evaluate(derivatives.get(paramList
                                .get(i)));
                        Object obj2 = parser.evaluate(derivatives.get(paramList
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java on lines 490..508

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 172.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                for (int i = 0; i < paramList.size() - 1; i++) {
                    for (int j = i + 1; j < paramList.size(); j++) {
                        Object obj1 = parser.evaluate(derivatives.get(paramList
                                .get(i)));
                        Object obj2 = parser.evaluate(derivatives.get(paramList
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java on lines 770..788

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 172.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    public ToxicologicalModelScope retrieveScope(Sheet sheet) {
        ToxicologicalModelScope scope = new ToxicologicalModelScope();
        
        for (int numrow = this.SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 322..357
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 322..359

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 172.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    public HealthModelScope retrieveScope(Sheet sheet) {
        
        
        HealthModelScope scope = new HealthModelScope();
        for (int numrow = this.SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java on lines 322..359
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java on lines 323..357

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 172.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    public ProcessModelScope retrieveScope(Sheet sheet) {

        
        ProcessModelScope scope = new ProcessModelScope();
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerProcessModelSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerHealthModelSheetImporter.java on lines 322..357
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerToxicologicalSheetImporter.java on lines 323..357

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 172.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

        elements.up.on('mousedown.touchspin', function(ev) {
          elements.up.off('touchstart.touchspin');  // android 4 workaround

          if (originalinput.is(':disabled')) {
            return;
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 400..412
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 414..426
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 442..454

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

        elements.down.on('mousedown.touchspin', function(ev) {
          elements.down.off('touchstart.touchspin');  // android 4 workaround

          if (originalinput.is(':disabled')) {
            return;
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 414..426
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 428..440
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 442..454

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

        elements.up.on('touchstart.touchspin', function(ev) {
          elements.up.off('mousedown.touchspin');  // android 4 workaround

          if (originalinput.is(':disabled')) {
            return;
Severity: Major
Found in de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js and 3 other locations - About 2 hrs to fix
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 400..412
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 414..426
de.bund.bfr.knime.js/src/js/lib/bootstrap-touchspin.js on lines 428..440

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    get value() {
      let data = [];
      this.body.childNodes.forEach(tr => {
        let inputCell = tr.lastChild; // 2nd cell (with input)
        let input = inputCell.firstChild; // <input>
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/1.7.2/editor/editor.js and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.js/js-lib/bfr/fskutil_1.0.0.js on lines 153..162

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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