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Showing 14,752 of 14,752 total issues

Function initServer has 67 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    BootstrapTable.prototype.initServer = function (silent, query, url) {
        var that = this,
            data = {},
            params = {
                searchText: this.searchText,
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-table/1_11_1/debug/js/bootstrap-table.js - About 2 hrs to fix

Function voronoi has 67 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function voronoi(data) {
      var points, polygons = data.map(function() {
        return [];
      }), fx = d3_functor(x), fy = d3_functor(y), d, i, n = data.length, Z = 1e6;
      if (fx === d3_svg_lineX && fy === d3_svg_lineY) points = data; else for (points = new Array(n),
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/d3.js - About 2 hrs to fix

Function d3_geo_resample has 67 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function d3_geo_resample(project) {
    var δ2 = .5, cosMinDistance = Math.cos(30 * d3_radians), maxDepth = 16;
    function resample(stream) {
      var λ00, φ00, x00, y00, a00, b00, c00, λ0, x0, y0, a0, b0, c0;
      var resample = {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/d3.js - About 2 hrs to fix

Function reDesign has 67 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function reDesign(ID) {
        var row = "                    <div class='row'>"
                + "                              <div class='col-xs-3 col-sm-3 col-lg-2 "
                + ID
                + "SideBar'><div class='list-group' id ='"
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/joiner.js - About 2 hrs to fix

File Backup.java has 278 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/Backup.java - About 2 hrs to fix

AssayImpl has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

public class AssayImpl extends MinimalEObjectImpl.Container implements Assay {
    /**
     * The default value of the '{@link #getAssayName() <em>Assay Name</em>}' attribute.
     * <!-- begin-user-doc -->
     * <!-- end-user-doc -->
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/AssayImpl.java - About 2 hrs to fix

EditTable has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

    private static class EditTable extends AbstractTableModel {

        private static final long serialVersionUID = 1L;

        private List<String> ids;
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/microbialdataedit/MicrobialDataEditNodeDialog.java - About 2 hrs to fix

JSSimulatorNodeModel has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

class JSSimulatorNodeModel
    extends AbstractWizardNodeModel<JSSimulatorViewRepresentation, JSSimulatorViewValue>
    implements PortObjectHolder {

  private static final NodeLogger LOGGER =
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/simulator/JSSimulatorNodeModel.java - About 2 hrs to fix

JSSimulatorNodeModel has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

public class JSSimulatorNodeModel
    extends AbstractWizardNodeModel<JSSimulatorViewRepresentation, JSSimulatorViewValue>
    implements PortObjectHolder {

  private static final NodeLogger LOGGER =
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/simulator/JSSimulatorNodeModel.java - About 2 hrs to fix

WriterNodeModel has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

class WriterNodeModel extends NoInternalsModel {

  private static final PortType[] IN_TYPES = {FskPortObject.TYPE};
  private static final PortType[] OUT_TYPES = {};
Severity: Minor
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java - About 2 hrs to fix

ModelReaderUi has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

public class ModelReaderUi extends JPanel implements ActionListener {
    
    private static final long serialVersionUID = 20120828;

    public static final String PARAM_LEVEL = "level";
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ui/ModelReaderUi.java - About 2 hrs to fix

Matrix has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

    public interface Matrix extends org.apache.xmlbeans.XmlObject
    {
        public static final org.apache.xmlbeans.SchemaType type = (org.apache.xmlbeans.SchemaType)
            org.apache.xmlbeans.XmlBeans.typeSystemForClassLoader(Matrix.class.getClassLoader(), "schemaorg_apache_xmlbeans.system.s4093BF42617F62F34AE6DB75748ED513").resolveHandle("matrix5f96elemtype");
Severity: Minor
Found in de.bund.bfr.knime.foodprocess.pcml/lib/src/de/bund/bfr/pcml10/MatrixDocument.java - About 2 hrs to fix

MatrixImpl has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

    public static class MatrixImpl extends org.apache.xmlbeans.impl.values.XmlComplexContentImpl implements de.bund.bfr.pcml10.MatrixDocument.Matrix
    {
        private static final long serialVersionUID = 1L;
        
        public MatrixImpl(org.apache.xmlbeans.SchemaType sType)
Severity: Minor
Found in de.bund.bfr.knime.foodprocess.pcml/lib/src/de/bund/bfr/pcml10/impl/MatrixDocumentImpl.java - About 2 hrs to fix

AgentImpl has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

    public static class AgentImpl extends org.apache.xmlbeans.impl.values.XmlComplexContentImpl implements de.bund.bfr.pcml10.AgentDocument.Agent
    {
        private static final long serialVersionUID = 1L;
        
        public AgentImpl(org.apache.xmlbeans.SchemaType sType)
Severity: Minor
Found in de.bund.bfr.knime.foodprocess.pcml/lib/src/de/bund/bfr/pcml10/impl/AgentDocumentImpl.java - About 2 hrs to fix

Agent has 24 methods (exceeds 20 allowed). Consider refactoring.
Open

    public interface Agent extends org.apache.xmlbeans.XmlObject
    {
        public static final org.apache.xmlbeans.SchemaType type = (org.apache.xmlbeans.SchemaType)
            org.apache.xmlbeans.XmlBeans.typeSystemForClassLoader(Agent.class.getClassLoader(), "schemaorg_apache_xmlbeans.system.s4093BF42617F62F34AE6DB75748ED513").resolveHandle("agent4636elemtype");
Severity: Minor
Found in de.bund.bfr.knime.foodprocess.pcml/lib/src/de/bund/bfr/pcml10/AgentDocument.java - About 2 hrs to fix

Consider simplifying this complex logical expression.
Open

            if (column.checkbox || column.radio) {
                type = column.checkbox ? 'checkbox' : type;
                type = column.radio ? 'radio' : type;

                text = [sprintf(that.options.cardView ?
Severity: Critical
Found in de.bund.bfr.knime.pmm.nodes/js-lib/bootstrap-table/1_11_1/debug/js/bootstrap-table.js - About 2 hrs to fix

Identical blocks of code found in 2 locations. Consider refactoring.
Open

package de.bund.bfr.knime.fsklab.nodes.environment;

import java.io.IOException;
import java.net.URL;
import java.nio.file.Files;
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/nodes/environment/ExistingEnvironmentManager.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/nodes/environment/ExistingEnvironmentManager.java on lines 1..65

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 170.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

package de.bund.bfr.knime.fsklab.nodes.environment;

import java.io.IOException;
import java.net.URL;
import java.nio.file.Files;
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/nodes/environment/ExistingEnvironmentManager.java and 1 other location - About 2 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/nodes/environment/ExistingEnvironmentManager.java on lines 1..65

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 170.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    public ConsumptionModelScope retrieveScope(Sheet sheet) {

        ConsumptionModelScope scope = new ConsumptionModelScope();

        for (int numrow = SCOPE_PRODHAZPOP_ROW; numrow <= (SCOPE_PRODHAZPOP_ROW + 11); numrow++) {
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java on lines 293..331
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 321..356

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 170.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

    public DoseResponseModelScope retrieveScope(Sheet sheet) {

        DoseResponseModelScope scope = new DoseResponseModelScope();
        //col_offset = 12;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerDoseResponseSheetImporter.java and 2 other locations - About 2 hrs to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerConsumptionSheetImporter.java on lines 257..292
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/SwaggerPredictiveModelSheetImporter.java on lines 321..356

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 170.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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