SiLeBAT/FSK-Lab

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Function update has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

NativeScrollbars.prototype.update = function (measure) {
  var needsH = measure.scrollWidth > measure.clientWidth + 1
  var needsV = measure.scrollHeight > measure.clientHeight + 1
  var sWidth = measure.nativeBarWidth

Function startState has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    startState: function() {
      return {
        f: blockNormal,

        prevLine: {stream: null},

Function update has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

NativeScrollbars.prototype.update = function (measure) {
  var needsH = measure.scrollWidth > measure.clientWidth + 1
  var needsV = measure.scrollHeight > measure.clientHeight + 1
  var sWidth = measure.nativeBarWidth

Function _compileAsync has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  function _compileAsync(schemaObj) {
    try { return self._compile(schemaObj); }
    catch(e) {
      if (e instanceof MissingRefError) return loadMissingSchema(e);
      throw e;

Function getData has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

function getData($data, lvl, paths) {
  var up, jsonPointer, data, matches;
  if ($data === '') return 'rootData';
  if ($data[0] == '/') {
    if (!JSON_POINTER.test($data)) throw new Error('Invalid JSON-pointer: ' + $data);

Function removeSchema has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

function removeSchema(schemaKeyRef) {
  if (schemaKeyRef instanceof RegExp) {
    _removeAllSchemas(this, this._schemas, schemaKeyRef);
    _removeAllSchemas(this, this._refs, schemaKeyRef);
    return this;

Function baseMerge has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function baseMerge(object, source, customizer, stackA, stackB) {
      if (!isObject(object)) {
        return object;
      }
      var isSrcArr = isArrayLike(source) && (isArray(source) || isTypedArray(source)),

Function binaryIndexBy has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    function binaryIndexBy(array, value, iteratee, retHighest) {
      value = iteratee(value);

      var low = 0,
          high = array ? array.length : 0,

Function init has 29 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    view.init = function(representation, value) {
        _rep = representation;
        _val = value;
        let _container = $(`<div class="simulationsDiv modal-sim"></div>`);
        document.createElement('body');

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  public static String writeSBMLFile(SBMLDocument doc, CombineArchive archive, String filePrefix,
      Map<String, URI> URIS) throws IOException, SBMLException, XMLStreamException {
    File tempFile = FileUtil.createTempFile("sbml", "");
    String fileName = filePrefix + doc.getModel().getId() + ".sbml";
    new SBMLWriter().write(doc, tempFile);
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/writer/WriterNodeModel.java on lines 521..528
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeModel.java on lines 574..581

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  public static String writeSBMLFile(SBMLDocument doc, CombineArchive archive, String filePrefix,
      Map<String, URI> URIS) throws IOException, SBMLException, XMLStreamException {
    File tempFile = FileUtil.createTempFile("sbml", "");
    String fileName = filePrefix + doc.getModel().getId() + ".sbml";
    new SBMLWriter().write(doc, tempFile);
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/writer/WriterNodeModel.java on lines 574..581
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java on lines 677..684

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 3 locations. Consider refactoring.
Open

  public static String writeSBMLFile(SBMLDocument doc, CombineArchive archive, String filePrefix,
      Map<String, URI> URIS) throws IOException, SBMLException, XMLStreamException {
    File tempFile = FileUtil.createTempFile("sbml", "");
    String fileName = filePrefix + doc.getModel().getId() + ".sbml";
    new SBMLWriter().write(doc, tempFile);
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/writer/WriterNodeModel.java on lines 521..528
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/writer/WriterNodeModel.java on lines 677..684

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  public static void removeJoinedParameters(JoinRelation[] relations, FskPortObject outfskPort) {

    if (relations != null)
      for (JoinRelation relation : relations) {

de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/joiner/JoinerNodeUtil.java on lines 589..608

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    if (outfskPort instanceof CombinedFskPortObject) {
      if (relations != null)
        for (JoinRelation relation : relations) {

          Iterator<Parameter> iter = SwaggerUtil.getParameter(outfskPort.modelMetadata).iterator();
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/joiner/JoinerNodeUtil.java on lines 258..274

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  public String buildJoiningScript() {

    StringBuilder stringBuilder = new StringBuilder();

    JoinRelation[] relations = getJoinerRelation();
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/CombinedFskPortObject.java on lines 1041..1053

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

  public String buildJoiningScript() {

    StringBuilder stringBuilder = new StringBuilder();

    JoinRelation[] relations = getJoinerRelation();
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/CombinedFskPortObject.java on lines 1042..1054

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 79.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

            O._$navBar._$nav = $('<ul class="nav nav-pointer pt-1 pt-md-0"></ul>')
                .appendTo(O._$navBar)
                .wrap('<div class="col-12 col-md-auto order-3 order-md-1 modal-nav-menu order-4"></div>')
                .wrap('<div class="collapse navbar-collapse" id="' + O._navId + '"></div>');
Severity: Major
Found in de.bund.bfr.knime.js/src/js/app/app.editable.mt.details.js and 1 other location - About 1 hr to fix
de.bund.bfr.knime.js/src/js/app/app.mt.details.js on lines 84..87

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 58.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

            O._$navBar._$nav = $('<ul class="nav nav-pointer pt-1 pt-md-0"></ul>')
                .appendTo(O._$navBar)
                .wrap('<div class="col-12 col-md-auto order-3 order-md-1 modal-nav-menu order-4"></div>')
                .wrap('<div class="collapse navbar-collapse" id="' + O._navId + '"></div>');
Severity: Major
Found in de.bund.bfr.knime.js/src/js/app/app.mt.details.js and 1 other location - About 1 hr to fix
de.bund.bfr.knime.js/src/js/app/app.editable.mt.details.js on lines 85..88

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 58.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    this.$selection.on('mousedown', function (evt) {
      // Only respond to left clicks
      if (evt.which !== 1) {
        return;
      }
de.bund.bfr.knime.js/src/js/lib/select2.full.js on lines 1640..1649

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 58.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

      if (typeof func != 'function') {
        if (typeof n == 'function') {
          var temp = n;
          n = func;
          func = temp;
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/jointjs/lodash.min.js on lines 7294..7302

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 58.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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