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Similar blocks of code found in 4 locations. Consider refactoring.
Open

    public NotificationChain basicSetExposure(Exposure newExposure, NotificationChain msgs) {
        Exposure oldExposure = exposure;
        exposure = newExposure;
        if (eNotificationRequired()) {
            ENotificationImpl notification = new ENotificationImpl(this, Notification.SET, MetadataPackage.MODEL_MATH__EXPOSURE, oldExposure, newExposure);
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/ModelMathImpl.java and 3 other locations - About 1 hr to fix
de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/DataBackgroundImpl.java on lines 130..138
de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/GeneralInformationImpl.java on lines 700..708
de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/ScopeImpl.java on lines 238..246

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

  public String toString() {
    ObjectMapper mapper = new ObjectMapper();

    try {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM1Schema.java and 2 other locations - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM12DataSchema.java on lines 457..479
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM2Schema.java on lines 284..304

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

  public String toString() {
    ObjectMapper mapper = new ObjectMapper();

    try {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM12DataSchema.java and 2 other locations - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM1Schema.java on lines 262..282
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM2Schema.java on lines 284..304

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

  public String toString() {
    ObjectMapper mapper = new ObjectMapper();

    try {
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM2Schema.java and 2 other locations - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM12DataSchema.java on lines 457..479
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/js/common/schema/JsM1Schema.java on lines 262..282

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    public TimeSeriesSchema() {

        try {
            addIntAttribute(ATT_CONDID);
            addStringAttribute(ATT_COMBASEID);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/pmmtablemodel/TimeSeriesSchema.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/pmmtablemodel/Model1Schema.java on lines 51..71

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @Test
    public void testLiterature() {
        final LiteratureList list = new LiteratureList();
        assertNull(list.getLiterature());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes.tests/src/de/bund/bfr/knime/pmm/js/common/LiteratureListTest.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes.tests/src/de/bund/bfr/knime/pmm/js/common/IndepListTest.java on lines 14..25

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    @Test
    public void testIndeps() {
        final IndepList list = new IndepList();
        assertNull(list.getIndeps());
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes.tests/src/de/bund/bfr/knime/pmm/js/common/IndepListTest.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes.tests/src/de/bund/bfr/knime/pmm/js/common/LiteratureListTest.java on lines 15..26

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    public Model1Schema() {
        try {
            addXmlAttribute(ATT_MODELCATALOG);

            addXmlAttribute(ATT_DEPENDENT);
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/pmmtablemodel/Model1Schema.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/pmmtablemodel/TimeSeriesSchema.java on lines 42..63

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 77.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    private static void test(PredictiveModelDataBackground background) {
        assertNotNull(background.getStudy());
        assertEquals(3, background.getStudySample().size());
        assertEquals(3, background.getLaboratory().size());
        assertEquals(3, background.getAssay().size());
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/ToxicologicalModelSheetImporterTest.java and 3 other locations - About 1 hr to fix
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/DoseResponseSheetImporterTest.java on lines 74..82
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/HealthModelSheetImporterTest.java on lines 77..85
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/OtherModelSheetImporterTest.java on lines 80..88

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    private static void test(OtherModelDataBackground background) {
        assertNotNull(background.getStudy());
        assertEquals(3, background.getStudySample().size());
        assertEquals(3, background.getLaboratory().size());
        assertEquals(3, background.getAssay().size());
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/OtherModelSheetImporterTest.java and 3 other locations - About 1 hr to fix
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/DoseResponseSheetImporterTest.java on lines 74..82
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/HealthModelSheetImporterTest.java on lines 77..85
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/ToxicologicalModelSheetImporterTest.java on lines 78..86

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                for (String param : paramList) {
                    Object obj = parser.evaluate(derivatives.get(param));

                    if (!(obj instanceof Double)) {
                        failed = true;
Severity: Major
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/Plotable.java on lines 758..768

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        if (matrixXml != null) {
            final Matrix matrix = new Matrix();
            matrix.id = matrixXml.id;
            matrix.name = matrixXml.name;
            matrix.detail = matrixXml.detail;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/editor/ModelEditorNodeModel.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/editor/ModelEditorNodeModel.java on lines 216..223

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

                result.add(new String[]{
                        "SELECT " + idConf + " FROM " + DBKernel.delimitL(tablename) +
                        " WHERE " + DBKernel.delimitL("Erstautor") + " IS NULL OR " + DBKernel.delimitL("Jahr") + " IS NULL OR " + DBKernel.delimitL("Titel") + " IS NULL",
                        GuiMessages.getString("Erstautor, Jahr, Titel sollten angegeben werden!")
                        });
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java and 3 other locations - About 1 hr to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 539..543
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 443..447
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 563..567

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        if (agentXml != null) {
            final Agent agent = new Agent();
            agent.id = agentXml.id;
            agent.name = agentXml.name;
            agent.detail = agentXml.detail;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/editor/ModelEditorNodeModel.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/editor/ModelEditorNodeModel.java on lines 226..233

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                for (int i = 0; i < indepVars.size(); i++) {
                    if (!indepVars.get(i).equals(AttributeUtilities.TIME)) {
                        if (miscValues.containsKey(indepVars.get(i))) {
                            parameters.put(indepVars.get(i),
                                    miscValues.get(indepVars.get(i)));
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelselectiontertiary/TableReader.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/primarymodelviewandselect/TableReader.java on lines 286..293

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        for (String modelID : primaryVariableBoxes.keySet()) {
            Map<String, String> primaryAssignments = new LinkedHashMap<>();

            for (String var : primaryVariableBoxes.get(modelID).keySet()) {
                String replacement = (String) primaryVariableBoxes.get(modelID)
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/CombinedJoiner.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/CombinedJoiner.java on lines 199..210

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        for (String modelID : secondaryVariableBoxes.keySet()) {
            Map<String, String> secondaryAssignments = new LinkedHashMap<>();

            for (String var : secondaryVariableBoxes.get(modelID).keySet()) {
                String replacement = (String) secondaryVariableBoxes
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/CombinedJoiner.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelanddatajoiner/CombinedJoiner.java on lines 186..197

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

                result.add(new String[]{
                        "SELECT " + idConf + " FROM " + DBKernel.delimitL(tablename) +
                        " WHERE " + DBKernel.delimitL("ZertifikatNr") + " IS NOT NULL AND (" + DBKernel.delimitL("Gueltigkeit") + " IS NULL OR " + DBKernel.delimitL("Zertifizierungssystem") + " IS NULL)",
                        GuiMessages.getString("Wenn die ZertifikatNummer angegeben ist, dann sollte auch deren Gültigkeit und das Zertifizierungssystem angegeben sein!")
                        });
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java and 3 other locations - About 1 hr to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 443..447
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 225..229
org.hsh.bfr.db/src/org/hsh/bfr/db/PlausibilityChecker.java on lines 563..567

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 4 locations. Consider refactoring.
Open

    private static void test(PredictiveModelDataBackground background) {
        assertNotNull(background.getStudy());
        assertEquals(3, background.getStudySample().size());
        assertEquals(3, background.getLaboratory().size());
        assertEquals(3, background.getAssay().size());
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/DoseResponseSheetImporterTest.java and 3 other locations - About 1 hr to fix
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/HealthModelSheetImporterTest.java on lines 77..85
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/OtherModelSheetImporterTest.java on lines 80..88
de.bund.bfr.knime.fsklab.metadata.model.tests/src/metadata/swagger/ToxicologicalModelSheetImporterTest.java on lines 78..86

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

                for (int i = 0; i < indepVars.size(); i++) {
                    if (!indepVars.get(i).equals(AttributeUtilities.TIME)) {
                        if (miscValues.containsKey(indepVars.get(i))) {
                            parameters.put(indepVars.get(i),
                                    miscValues.get(indepVars.get(i)));
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/primarymodelviewandselect/TableReader.java and 1 other location - About 1 hr to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/modelselectiontertiary/TableReader.java on lines 296..303

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 76.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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