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Identical blocks of code found in 2 locations. Consider refactoring.
Open

      if (!handler.getStdErr().isEmpty()) {
        final LinkedList<String> output = getLinkedListFromOutput(handler.getStdErr());
        setExternalErrorOutput(output);
  
        for (final String line : output) {
Severity: Minor
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/runner/RunnerNodeModel.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_7_2/de/bund/bfr/knime/fsklab/nodes/v1_7_2/runner/RunnerNodeModel.java on lines 399..408

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        if (!propA.isEmpty() && ((String) propA.get(TYPE)).equals("string") && metadataA.has(key)
                && !metadataA.get(key).isNull()) {
            modelAValue = metadataA.get(key).asText();
        }
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/ConversionUtils.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/ConversionUtils.java on lines 335..338

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        if (depVarMaxCell.getCellType() == Cell.CELL_TYPE_STRING) {
            template.dependentVariable.max = depVarMaxCell.getStringCellValue();
        } else if (depVarMaxCell.getCellType() == Cell.CELL_TYPE_NUMERIC) {
            template.dependentVariable.max = Double.toString(depVarMaxCell.getNumericCellValue());
        }
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/src/metadata/LegacyMetadataImporter.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.metadata.model/src/metadata/LegacyMetadataImporter.java on lines 140..144

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

        if (indepVar.size() == 1) {
            formula = MathUtilities.replaceVariable(formula, ((IndepXml) indepVar.get(0)).name,
                    AttributeUtilities.TIME);
            ((IndepXml) indepVar.get(0)).name = AttributeUtilities.TIME;
        }
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/xlsmodelreader/XLSModelReaderNodeModel.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/xlsmodelreader/XLSModelReaderNodeModel.java on lines 96..100

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private static Map<String, String> shapeMapToStringMap(
            Map<String, Shape> map) {
        Map<String, String> newMap = new LinkedHashMap<>();
        Map<Shape, String> shapeMap = (new ColorAndShapeCreator(0))
                .getNameByShapeMap();
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/XmlConverter.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/XmlConverter.java on lines 226..237

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    if (model.getNumSpecies() > 0) {
      PMFSpecies species = SBMLFactory.createPMFSpecies(model.getSpecies(0));
      template.organism = species.getName();
      if (species.isSetDetail()) {
        template.organismDetails = species.getDetail();
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/MetadataDocument.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/MetadataDocument.java on lines 302..308

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

                            String b = "unloader <- function() {\n" + "  defaults = getOption(\"defaultPackages\")\n"
                                    + "  installed = (.packages())\n" + "  for (pkg in installed){\n"
                                    + "      if (!(as.character(pkg) %in% defaults)) {\n"
                                    + "          if(!(pkg == \"base\")){\n"
                                    + "              package_name = paste(\"package:\", as.character(pkg), sep=\"\")\n"
Severity: Minor
Found in de.bund.bfr.knime.fsklab.r/src/de/bund/bfr/knime/fsklab/r/server/RConnectionFactory.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/runner/RunnerNodeModel.java on lines 236..249

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

        else { // level = 3
            q = querySecOnly;
            if (estimatedModelID > 0) {
                myWhere = " WHERE \"EstModelSOView\".\"" + ATT_ESTMODELID + "\" = " + estimatedModelID;
                myWhereCache = " WHERE \"" + ATT_ESTMODELID + "\" = " + estimatedModelID;
Severity: Major
Found in de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java and 2 other locations - About 50 mins to fix
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 452..458
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 445..452

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

        MyTable ICD10_Kodes = new MyTable("ICD10_Kodes", new String[]{"Ebene","Ort","Art",
                "KapNr","GrVon","Code","NormCode","CodeOhnePunkt",
                "Titel","P295","P301",
                "MortL1Code","MortL2Code","MortL3Code","MortL4Code","MorbLCode",
                "SexCode","SexFehlerTyp",
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java and 2 other locations - About 50 mins to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1395..1397
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1398..1407

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

        } else if (level == 2) {
            q = querySei2;
            if (estimatedModelID > 0) {
                myWhere = " WHERE \"EstModelSecView\".\"" + ATT_ESTMODELID + "2\" = " + estimatedModelID;
                myWhereCache = " WHERE \"" + ATT_ESTMODELID + "2\" = " + estimatedModelID;
Severity: Major
Found in de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java and 2 other locations - About 50 mins to fix
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 459..465
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 445..452

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    if (model.getNumCompartments() > 0) {
      PMFCompartment compartment = SBMLFactory.createPMFCompartment(model.getCompartment(0));
      template.matrix = compartment.getName();
      if (compartment.isSetDetail()) {
        template.matrixDetails = compartment.getDetail();
Severity: Minor
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/MetadataDocument.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.deprecatednodes/src-1_0_2/de/bund/bfr/knime/fsklab/nodes/MetadataDocument.java on lines 293..299

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                new String[]{"Klassifikationsebene, 1 Zeichen: 3 = Dreisteller; 4 = Viersteller; 5 = Fünfsteller","Ort der Schluesselnummer im Klassifikationsbaum, 1 Zeichen: T = terminale Schluesselnummer (kodierbarer Endpunkt); N = nichtterminale Schluesselnummer (kein kodierbarer Endpunkt)","Art der Vier- und Fünfsteller: X = explizit aufgeführt (praekombiniert); S = per Subklassifikation (postkombiniert)",
                "Kapitelnummer","erster Dreisteller der Gruppe","Schluesselnummer ohne eventuelles Kreuz, bis zu 7 Zeichen","Schluesselnummer ohne Strich, Stern und  Ausrufezeichen, bis zu 6 Zeichen","Schluesselnummer ohne Punkt, Strich, Stern und Ausrufezeichen, bis zu 5 Zeichen",
                "Klassentitel, bis zu 255 Zeichen","Verwendung der Schluesselnummer nach Paragraph 295: P = zur Primaerverschluesselung zugelassene Schluesselnummer; O = nur als Sternschluesselnummer zugelassen; Z = nur als Ausrufezeichenschluesselnummer zugelassen; V = nicht zur Verschluesselung zugelassen","Verwendung der Schluesselnummer nach Paragraph 301: P = zur Primaerverschluesselung zugelassen; O = nur als Sternschluesselnummer zugelassen; Z = nur als Ausrufezeichenschluesselnummer zugelassen; V = nicht zur Verschluesselung zugelassen",
                "Bezug zur Mortalitaetsliste 1","Bezug zur Mortalitaetsliste 2","Bezug zur Mortalitaetsliste 3","Bezug zur Mortalitaetsliste 4","Bezug zur Morbiditaetsliste",
                "Geschlechtsbezug der Schluesselnummer: 9 = kein Geschlechtsbezug; M = maennlich; W = weiblich", "Art des Fehlers bei Geschlechtsbezug: 9 = irrelevant; M = Muss-Fehler; K = Kann-Fehler",
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java and 2 other locations - About 50 mins to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1385..1394
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1395..1397

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    private static Map<String, Shape> stringMapToShapeMap(
            Map<String, String> map) {
        Map<String, Shape> newMap = new LinkedHashMap<>();
        Map<String, Shape> shapeMap = (new ColorAndShapeCreator(0))
                .getShapeByNameMap();
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/XmlConverter.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/XmlConverter.java on lines 213..224

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

        if (level == 1) {
            q = queryPei2;
            //System.err.println(q);
            if (estimatedModelID > 0) {
                myWhere = " WHERE \"EstModelPrimView\".\"" + ATT_ESTMODELID + "\" = " + estimatedModelID;
Severity: Major
Found in de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java and 2 other locations - About 50 mins to fix
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 459..465
de.bund.bfr.knime.pmm.bfrdbiface.lib/src/de/bund/bfr/knime/pmm/bfrdbiface/lib/Bfrdb.java on lines 452..458

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

      String noImage = "<?xml version=\"1.0\"?>\n"
          + "<svg xmlns=\"http://www.w3.org/2000/svg\"\n"
          + "     height=\"300px\" width=\"300px\"\n"
          + "     version=\"1.1\"\n"
          + "     viewBox=\"-300 -300 600 600\"\n"
Severity: Minor
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/runner/RunnerNodeModel.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.fsklab.r/src/de/bund/bfr/knime/fsklab/r/server/RConnectionFactory.java on lines 659..665

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 3 locations. Consider refactoring.
Open

                new String[]{"VARCHAR(1)","VARCHAR(1)","VARCHAR(1)","INTEGER","INTEGER","VARCHAR(7)","VARCHAR(6)","VARCHAR(5)",
                "VARCHAR(255)","VARCHAR(1)","VARCHAR(1)","INTEGER","INTEGER","INTEGER","INTEGER","INTEGER","VARCHAR(1)","VARCHAR(1)","VARCHAR(3)",
                "VARCHAR(4)","VARCHAR(3)","VARCHAR(4)","VARCHAR(1)","VARCHAR(1)","VARCHAR(1)","VARCHAR(1)","VARCHAR(1)"},
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java and 2 other locations - About 50 mins to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1385..1394
org.hsh.bfr.db/src/org/hsh/bfr/db/MyDBTablesNew.java on lines 1398..1407

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if (key.equals("water activity")) {
                Double value = parse(token[1]);
                // next.setWaterActivity(value);
                next.addMisc(AttributeUtilities.ATT_AW_ID, AttributeUtilities.ATT_AW, AttributeUtilities.ATT_AW, value,
                        Arrays.asList(Categories.getAwCategory().getName()), Categories.getAwUnit());
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/combaseio/lib/CombaseReader.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/combaseio/lib/CombaseReader.java on lines 268..274

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

                            if (progress != null) {
                                progress.setVisible(true);
                                progress.setStringPainted(true);
                                progress.setString("Plausibilitätstests laufen...");
                                progress.setMinimum(0);
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/actions/PlausibleAction.java and 1 other location - About 50 mins to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/exports/ExcelExport.java on lines 79..86

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

            if (key.equals("ph")) {
                Double value = parse(token[1]);
                // next.setPh(value);
                next.addMisc(AttributeUtilities.ATT_PH_ID, AttributeUtilities.ATT_PH, AttributeUtilities.ATT_PH, value,
                        Arrays.asList(Categories.getPhCategory().getName()), Categories.getPhUnit());
Severity: Minor
Found in de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/combaseio/lib/CombaseReader.java and 1 other location - About 50 mins to fix
de.bund.bfr.knime.pmm.nodes/src/de/bund/bfr/knime/pmm/combaseio/lib/CombaseReader.java on lines 277..283

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

              if (progress != null) {
                  progress.setVisible(true);
                  progress.setStringPainted(true);
                  progress.setString("Exporting Excel Datei...");
                  progress.setMinimum(0);
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/exports/ExcelExport.java and 1 other location - About 50 mins to fix
org.hsh.bfr.db/src/org/hsh/bfr/db/gui/actions/PlausibleAction.java on lines 87..94

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 60.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

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