SiLeBAT/FSK-Lab

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Method runSnippet has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public final void runSnippet(final FskPortObject fskObj, final FskSimulation simulation,
      final ExecutionContext exec, NodeLogger LOGGER, File imageFile) throws Exception {

Method getListCellRendererComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

            public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected,
                    boolean cellHasFocus) {

Method createSBML has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static SBMLDocument createSBML(FskPortObject fskObj, CombineArchive archive,
      String ModelId, Map<String, URI> URIS, String filePrefix) throws IOException {

Method getListCellRendererComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

            public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected,
                    boolean cellHasFocus) {

Method createExtSubModel has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public static ExternalModelDefinition createExtSubModel(SBMLDocument doc, String externalFileName,
      CompSBMLDocumentPlugin compDoc, CompModelPlugin compMainModel, String subModelName)

Method generateColorMap has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public static LinkedHashMap<String, Object[]> generateColorMap(FskPortObject portObject,
      LinkedHashMap<String, Object[]> originalNamesMap, List<Parameter> topLevelJoinedModelParams, 
       AtomicInteger index, AtomicInteger generatedColorInt) {

Method writeFSKObject has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public static void writeFSKObject(FskPortObject fskObj, CombineArchive archive, String filePrefix,
      Map<String, URI> URIS, ScriptHandler scriptHandler) throws Exception {

Method createSBML has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static SBMLDocument createSBML(FskPortObject fskObj, CombineArchive archive,
      String ModelId, Map<String, URI> URIS, String filePrefix) throws IOException {

Method addParameter has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public void addParameter(Parameter parameter, String modelId, String data, String parameterType,
      String language) {

Method addIdentifierToParametersAndStoreInMap has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static void addIdentifierToParametersAndStoreInMap(FskPortObject portObject,
      String suffix, int suffixInsertionIndex,
      final Map<String, List<String>> unModifiedParamsNames,
      Map<String, Map<String, String>> old_new_pramsMap) {

Method getParameterMap has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static Map<String, List<String>> getParameterMap(FskPortObject jFirstInputPort,
      FskPortObject jSecondInputPort, FskPortObject jThirdInputPort, FskPortObject jFourthInputPort,
      Map<String, FskPortObject> fskID_to_fskObject) {

Method addIdentifierToParametersForCombinedObject has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  public static void addIdentifierToParametersForCombinedObject(FskPortObject portObject,
      String suffix, int suffixInsertionIndex,
      final Map<String, List<String>> unModifiedParamsNames,
      Map<String, Map<String, String>> old_new_pramsMap)

Method getListCellRendererComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

      public Component getListCellRendererComponent(JList list, Object value, int index,
          boolean isSelected, boolean cellHasFocus) {

Method addResourcesToArchive has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static void addResourcesToArchive(List<Path> resources, CombineArchive archive,
      String filePrefix, Map<String, URI> uris, ScriptHandler scriptHandler) throws Exception {

Method writeCombinedObject has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

  private static void writeCombinedObject(CombinedFskPortObject fskObj, CombineArchive archive,
      Map<String, URI> URIS, String filePrefix, ScriptHandler scriptHandler) throws Exception {

Method getListCellRendererComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

      public Component getListCellRendererComponent(JList list, Object value, int index,
          boolean isSelected, boolean cellHasFocus) {

Method plotBothStrict has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

    private void plotBothStrict(XYPlot plot, Plotable plotable, String id,
            double minX, double maxX) throws ConvertException {

Method getTableCellEditorComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

        public Component getTableCellEditorComponent(JTable table,
                Object value, boolean isSelected, int row, int column) {

Method plotDataSet has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

    private void plotDataSet(XYPlot plot, Plotable plotable, String id,
            Color defaultColor, Shape defaultShape) throws ConvertException {

Method getTableCellEditorComponent has 5 arguments (exceeds 4 allowed). Consider refactoring.
Open

        public Component getTableCellEditorComponent(JTable table,
                Object value, boolean isSelected, int row, int column) {
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