SiLeBAT/FSK-Lab

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Method retrieveQualityMeasures has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private QualityMeasures retrieveQualityMeasures(Sheet sheet) {
        final QualityMeasures measures = new QualityMeasures();

        final Cell sseCell = sheet.getRow(QUALITY_MEASURES__SSE).getCell(M);
        if (sseCell.getCellTypeEnum() == CellType.NUMERIC) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method getDbuuid has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private String getDbuuid(KnimeTuple tuple) {
        String gid = "";
        if (mType == MODEL_TYPE.M1) {
            gid = tuple.getString(Model1Schema.ATT_DBUUID);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected PortObject[] execute(PortObject[] inObjects, ExecutionContext exec)
            throws Exception {
        DataTable table = (DataTable) inObjects[0];
        TableReader reader;

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method saveToNodeSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public void saveToNodeSettings(NodeSettingsWO settings) {
    catalogModel.saveToNodeSettings(settings.addNodeSettings(ATT_MODELCATALOG));
    dep.saveToNodeSettings(settings.addNodeSettings(ATT_DEPENDENT));
    paramList.saveToNodeSettings(settings.addNodeSettings(ATT_PARAMETER));

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method loadFromNodeSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  public void loadFromNodeSettings(NodeSettingsRO settings) throws InvalidSettingsException {
    catalogModel.loadFromNodeSettings(settings.getNodeSettings(ATT_MODELCATALOG));
    dep.loadFromNodeSettings(settings.getNodeSettings(ATT_DEPENDENT));
    paramList.loadFromNodeSettings(settings.getNodeSettings(ATT_PARAMETER));

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method saveToNodeSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public void saveToNodeSettings(NodeSettingsWO settings) {
        SettingsHelper.addInt(ATT_CONDID, condId, settings);
        SettingsHelper.addString(ATT_COMBASEID, combaseId, settings);
        miscList.saveToNodeSettings(settings.addNodeSettings(ATT_MISC));

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method loadFromNodeSettings has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public void loadFromNodeSettings(NodeSettingsRO settings) throws InvalidSettingsException {
        condId = SettingsHelper.getInteger(ATT_CONDID, settings);
        combaseId = SettingsHelper.getString(ATT_COMBASEID, settings);
        miscList.loadFromNodeSettings(settings.getNodeSettings(ATT_MISC));

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method modelNameBoxActionPerformed has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private void modelNameBoxActionPerformed(ActionEvent e) {
        if (dontTouch) return;
        table.clearTable();
        // if (!dontRemoveSec && m_secondaryModels != null)
        // m_secondaryModels.clear();

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method createOutputDataTables has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private BufferedDataTable[] createOutputDataTables(final ExecutionContext exec) {
        ModelPlotterViewValue value = getViewValue();
        DataTableSpec[] outSpces = createOutputDataTableSpecs();
        
        BufferedDataContainer constBC = exec.createDataContainer(outSpces[0]);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method saveSettingsTo has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    protected void saveSettingsTo( final NodeSettingsWO settings ) {
        // OneStepFitTss
        if (oneStepFitTs != null) settings.addString(ManualModelConfNodeModel.PARAM_TSONESTEP, XmlConverter.objectToXml(oneStepFitTs));
        // Modelle

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setTS has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    public void setTS(String xmlString) {
        try {
            PmmXmlDoc doc = new PmmXmlDoc(xmlString);
            for (int i = 0; i < doc.size(); i++) {
                PmmXmlElementConvertable el = doc.get(i);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method execute has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  @Override
  protected BufferedDataTable[] execute(final BufferedDataTable[] inData,
      final ExecutionContext exec) throws Exception {

    // Gets model type from the document annotation

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method checkTimeSeriesDeletion has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private boolean checkTimeSeriesDeletion(Connection conn, Integer tsID) {
        boolean result = true;
        if (tsID == null)
            return false;
        String sql = "SELECT " + DBKernel.delimitL("ID") + " FROM " + DBKernel.delimitL("GeschaetzteModelle")

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method parseMiscs has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

  public static PmmXmlDoc parseMiscs(Map<String, Double> miscs) {
    PmmXmlDoc cell = new PmmXmlDoc();

    if (miscs != null) {
      // First misc item has id -1 and the rest of items have negative

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method paramXml2Coefficient has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    public static PMFCoefficient paramXml2Coefficient(ParamXml paramXml) {
        String name = paramXml.name;
        double value = (paramXml.value == null) ? 0.0 : paramXml.value;
        String unit = (paramXml.unit == null) ? "dimensionless" : PMFUtil.createId(paramXml.unit);
        Double P = paramXml.P;

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method readSecondaryTable has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private void readSecondaryTable(BufferedDataTable table) {
        readPrimaryTable(table);

        KnimeRelationReader reader = new KnimeRelationReader(
                SchemaFactory.createM2Schema(), table);

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method checkPrimaryDeletion has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private boolean checkPrimaryDeletion(Connection conn, Integer estID) {
        boolean result = true;
        if (estID == null)
            return false;
        String sql = "SELECT " + DBKernel.delimitL("GeschaetztesSekundaermodell") + " FROM "

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method write has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

        @Override
        public void write(List<KnimeTuple> tuples, boolean isPMFX, String dir, String mdName, Metadata metadata,
                boolean splitModels, String notes, ExecutionContext exec) throws Exception {

            final String modelExtension = isPMFX ? "pmf" : "sbml";

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setMatrix has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    private void setMatrix(PmmTimeSeries next, String matrixname) {
        Integer id = null;
        String matrixdetail = null;
        int index = matrixname.indexOf("(");
        if (index > 0) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method isValid has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring.
Open

    @Override
    public boolean isValid() {
        for (int id : variableBoxes.keySet()) {
            for (String param : variableBoxes.get(id).keySet()) {
                if (variableBoxes.get(id).get(param).getSelectedItem() == null) {

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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