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Method okButtonActionPerformed has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.
Open

    private void okButtonActionPerformed(ActionEvent e) {
        String newSA = textField1.getText();
        String newPass = String.valueOf(passwordField1.getPassword());
        if (newPass.equals(String.valueOf(passwordField2.getPassword()))) {
            String ibText = "";
Severity: Minor
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/gui/ChangeMasterPass.java - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method setVisibleParameters has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.
Open

    public void setVisibleParameters(Set<String> visible) {
        if (visible.equals(lastVisibleParameters)) {
            return;
        }
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/ChartConfigPanel.java - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method updateMetaData has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.
Open

    private static void updateMetaData(List<KnimeTuple> tuples, Map<KnimeTuple, List<KnimeTuple>> tupleCombinations) {
        Map<Integer, Set<String>> organisms = new LinkedHashMap<>();
        Map<Integer, Set<String>> matrices = new LinkedHashMap<>();
        Map<Integer, Set<String>> organismDetails = new LinkedHashMap<>();
        Map<Integer, Set<String>> matrixDetails = new LinkedHashMap<>();
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ModelCombiner.java - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method getColumnClass has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.
Open

        @Override
        public Class<?> getColumnClass(int column) {
            switch (column) {
            case 0:
                return String.class;
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/chart/ChartSelectionPanel.java - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method importCells has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.
Open

  private static final void importCells(final REXP rexp, final DataCell[] column,
      final boolean nonNumbersAsMissing) throws REXPMismatchException {
    if (rexp.isLogical()) {
      final byte[] bytes = rexp.asBytes();
      for (int i = 0; i < bytes.length; ++i) {
Severity: Minor
Found in de.bund.bfr.knime.fsklab.r/src/de/bund/bfr/knime/fsklab/r/client/RController.java - About 5 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

File DateInputDialog.java has 392 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 * ------------------------------------------------------------------------
 *  Copyright by KNIME GmbH, Konstanz, Germany
 *  Website: http://www.knime.org; Email: contact@knime.org
 *
Severity: Minor
Found in de.bund.bfr.knime.pmm.common/src/de/bund/bfr/knime/pmm/common/ui/DateInputDialog.java - About 5 hrs to fix

Method doSwitch has 135 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    @Override
    protected T doSwitch(int classifierID, EObject theEObject) {
        switch (classifierID) {
            case MetadataPackage.GENERAL_INFORMATION: {
                GeneralInformation generalInformation = (GeneralInformation)theEObject;
Severity: Major
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/util/MetadataSwitch.java - About 5 hrs to fix

Method execute has 135 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] execute(final PortObject[] inData, final ExecutionContext exec)
      throws InvalidSettingsException, IOException, CanceledExecutionException,
      InvalidFormatException {
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/src-1_9_0/de/bund/bfr/knime/fsklab/v1_9/creator/CreatorNodeModel.java - About 5 hrs to fix

Method execute has 135 lines of code (exceeds 25 allowed). Consider refactoring.
Open

  @Override
  protected PortObject[] execute(final PortObject[] inData, final ExecutionContext exec)
      throws InvalidSettingsException, IOException, CanceledExecutionException,
      InvalidFormatException {
Severity: Major
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/creator/CreatorNodeModel.java - About 5 hrs to fix

Function token has 135 lines of code (exceeds 25 allowed). Consider refactoring.
Open

      token: function (stream, state) {
        if (!stream) return;

        //check for state changes
        if (state.stack.length === 0) {
Severity: Major
Found in de.bund.bfr.knime.js/js-lib/codemirror-5.49.2/mode/ebnf/ebnf.js - About 5 hrs to fix

File RConnectionFactory.java has 391 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*
 * ------------------------------------------------------------------ Copyright by KNIME GmbH,
 * Konstanz, Germany Website: http://www.knime.org; Email: contact@knime.org
 *
 * This program is free software; you can redistribute it and/or modify it under the terms of the
Severity: Minor
Found in de.bund.bfr.knime.fsklab.r/src/de/bund/bfr/knime/fsklab/r/server/RConnectionFactory.java - About 5 hrs to fix

Method getCharge_Lieferung has 43 arguments (exceeds 4 allowed). Consider refactoring.
Open

    private Integer[] getCharge_Lieferung(String id, String name, String street, String streetNumber, String zip, String city, String county, String country, String kind,
            String vat, String article, String articleNumber, String prodTreatment, String charge, String dayMHD, String monthMHD, String yearMHD, String dayP, String monthP,
            String yearP, String originCountry, String dayD, String monthD, String yearD, String amountKG, String typePU, String numPU, String idTo, String nameTo,
            String streetTo, String streetNumberTo, String zipTo, String cityTo, String countyTo, String countryTo, String kindTo, String vatTo, String serial, String cqr,
            String EndChain, String Explanation_EndChain, String Further_Traceback, String MicrobiologicalSample) {
Severity: Major
Found in org.hsh.bfr.db/src/org/hsh/bfr/db/imports/custom/LieferkettenImporterEFSA.java - About 5 hrs to fix

Function _create has 134 lines of code (exceeds 25 allowed). Consider refactoring.
Open

    _create: function() {

        var n, i, handle, axis, hname,
            that = this,
            o = this.options;
Severity: Major
Found in de.bund.bfr.knime.pmm.nodes/js-src/de/bund/bfr/knime/pmm/js/modelplotter/jquery-ui.js - About 5 hrs to fix

Similar blocks of code found in 2 locations. Consider refactoring.
Open

    function mapDomain(string, fn) {
        var parts = string.split('@');
        var result = '';
        if (parts.length > 1) {
            // In email addresses, only the domain name should be punycoded. Leave
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/punycode.js and 1 other location - About 5 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js on lines 5520..5534

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 142.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Similar blocks of code found in 2 locations. Consider refactoring.
Open

function mapDomain(string, fn) {
    var parts = string.split('@');
    var result = '';
    if (parts.length > 1) {
        // In email addresses, only the domain name should be punycoded. Leave
Severity: Major
Found in de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/ajv.min.js and 1 other location - About 5 hrs to fix
de.bund.bfr.knime.fsklab.deprecatednodes/js-src/de/bund/bfr/knime/fsklab/nodes/joiner/emfbundle/punycode.js on lines 97..111

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 142.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File MyChartDialog.java has 389 lines of code (exceeds 250 allowed). Consider refactoring.
Open

/*******************************************************************************
 * Copyright (c) 2015 Federal Institute for Risk Assessment (BfR), Germany
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
Severity: Minor
Found in de.bund.bfr.knime.foodprocess/src/de/bund/bfr/knime/foodprocess/ui/MyChartDialog.java - About 5 hrs to fix

GeneralInformationImpl has 40 methods (exceeds 20 allowed). Consider refactoring.
Open

public class GeneralInformationImpl extends MinimalEObjectImpl.Container implements GeneralInformation {
    /**
     * The default value of the '{@link #getName() <em>Name</em>}' attribute.
     * <!-- begin-user-doc -->
     * <!-- end-user-doc -->
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/metadata/impl/GeneralInformationImpl.java - About 5 hrs to fix

PredictiveModelScopeProduct has 40 methods (exceeds 20 allowed). Consider refactoring.
Open

@javax.annotation.Generated(value = "io.swagger.codegen.languages.JavaClientCodegen", date = "2019-07-02T16:22:48.194+02:00")
public class PredictiveModelScopeProduct {
  @SerializedName("name")
  private String name = null;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/PredictiveModelScopeProduct.java - About 5 hrs to fix

Product has 40 methods (exceeds 20 allowed). Consider refactoring.
Open

@javax.annotation.Generated(value = "io.swagger.codegen.languages.JavaClientCodegen", date = "2019-07-02T16:22:48.194+02:00")
public class Product {
  @SerializedName("name")
  private String name = null;
Severity: Minor
Found in de.bund.bfr.knime.fsklab.metadata.model/gen/de/bund/bfr/metadata/swagger/Product.java - About 5 hrs to fix

JoinerNodeModel has 40 methods (exceeds 20 allowed). Consider refactoring.
Open

public final class JoinerNodeModel extends
    AbstractWizardNodeModel<JoinerViewRepresentation, JoinerViewValue> implements PortObjectHolder {

  private final JoinerNodeSettings m_config = new JoinerNodeSettings();
Severity: Minor
Found in de.bund.bfr.knime.fsklab.nodes/src/de/bund/bfr/knime/fsklab/v2_0/joiner/JoinerNodeModel.java - About 5 hrs to fix
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