app/controllers/biological_associations_controller.rb
class BiologicalAssociationsController < ApplicationController
include DataControllerConfiguration::ProjectDataControllerConfiguration
before_action :set_biological_association, only: [:show, :edit, :update, :destroy, :api_show, :api_globi, :api_resource_relationship]
after_action -> { set_pagination_headers(:biological_associations) }, only: [:index, :api_index, :api_index_simple], if: :json_request?
# GET /biological_associations
# GET /biological_associations.json
def index
respond_to do |format|
format.html {
@recent_objects = BiologicalAssociation.recent_from_project_id(sessions_current_project_id).order(updated_at: :desc).limit(10)
render '/shared/data/all/index'
}
format.json {
@biological_associations = Queries::BiologicalAssociation::Filter.new(params)
.all
.where(project_id: sessions_current_project_id)
.page(params[:page])
.per(params[:per])
}
end
end
# GET /biological_associations/1
# GET /biological_associations/1.json
def show
end
# GET /biological_associations/new
def new
redirect_to edit_biological_associations_graph_task_path
end
# GET /biological_associations/1/edit
def edit
end
def list
@biological_associations = BiologicalAssociation.with_project_id(sessions_current_project_id).order(:id).page(params[:page]) #.per(10)
end
# POST /biological_associations
# POST /biological_associations.json
def create
@biological_association = BiologicalAssociation.new(biological_association_params)
respond_to do |format|
if @biological_association.save
format.html { redirect_to @biological_association, notice: 'Biological association was successfully created.' }
format.json { render :show, status: :created, location: @biological_association }
else
format.html { render :new }
format.json { render json: @biological_association.errors, status: :unprocessable_entity }
end
end
end
# PATCH/PUT /biological_associations/1
# PATCH/PUT /biological_associations/1.json
def update
respond_to do |format|
if @biological_association.update(biological_association_params)
format.html { redirect_to @biological_association, notice: 'Biological association was successfully updated.' }
format.json { render :show, status: :ok, location: @biological_association }
else
format.html { render :edit }
format.json { render json: @biological_association.errors, status: :unprocessable_entity }
end
end
end
# DELETE /biological_associations/1
# DELETE /biological_associations/1.json
def destroy
@biological_association.destroy
respond_to do |format|
format.html { redirect_to biological_associations_url, notice: 'Biological association was successfully destroyed.' }
format.json { head :no_content }
end
end
def search
if params[:id].blank?
redirect_to biological_associations_path, alert: 'You must select an item from the list with a click or tab press before clicking show.'
else
redirect_to biological_association_path(params[:id])
end
end
def api_show
render '/biological_associations/api/v1/show'
end
def api_globi
render json: @biological_association.globi_extension_json, status: :ok
end
def api_resource_relationship
render json: @biological_association.globi_extension_json, status: :ok
end
def api_index
q = ::Queries::BiologicalAssociation::Filter.new(params.merge!(api: true)).all
.where(project_id: sessions_current_project_id)
.order('biological_associations.id')
respond_to do |format|
format.json {
@biological_associations = q.page(params[:page]).per(params[:per])
render '/biological_associations/api/v1/index'
}
format.csv {
@biological_associations = q
send_data Export::CSV.generate_csv(
@biological_associations,
exclude_columns: %w{updated_by_id created_by_id project_id},
), type: 'text',
filename: "biological_associations_#{DateTime.now}.tsv"
}
format.globi {
if q.page(params[:page]).per(params[:per]).count < 1001
send_data Export::CSV::Globi.csv(q.page(params[:page]).per(params[:per])),
type: 'text',
filename: "biological_associations_globi_#{DateTime.now}.tsv"
else
render json: { msg: 'At present this format is only allowed for 1000 or less records.' }, status: :unprocessable_entity
end
}
end
end
def api_index_simple
@biological_associations = ::Queries::BiologicalAssociation::Filter.new(params.merge!(api: true))
.all
.where(project_id: sessions_current_project_id)
.order('biological_associations.id')
.page(params[:page])
.per(params[:per])
respond_to do |format|
format.json { render '/biological_associations/api/v1/simple' and return }
format.csv {
send_data Export::CSV::BiologicalAssociations::Simple.csv(@biological_associations),
type: 'text',
filename: "biological_associations_simple_#{DateTime.now}.tsv"
}
end
end
# PATCH /biological_associations/batch_update.json?biological_association_query=<>&biological_association={}
def batch_update
if r = BiologicalAssociation.batch_update(
preview: params[:preview],
biological_association: biological_association_params.merge(by: sessions_current_user_id),
biological_association_query: params[:biological_association_query] )
render json: r.to_json, status: :ok
else
render json: {}, status: :unprocessable_entity
end
end
private
def set_biological_association
@biological_association = BiologicalAssociation.where(project_id: sessions_current_project_id).find(params[:id])
end
def biological_association_params
params.require(:biological_association).permit(
:biological_relationship_id, :biological_association_subject_id, :biological_association_subject_type,
:biological_association_object_id, :biological_association_object_type,
:subject_global_id,
:object_global_id,
:rotate,
origin_citation_attributes: [:id, :_destroy, :source_id, :pages],
citations_attributes: [:id, :is_original, :_destroy, :source_id, :pages, :citation_object_id, :citation_object_type],
)
end
end