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app/models/biological_association.rb

Summary

Maintainability
A
40 mins
Test Coverage

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

    write_attribute(:biological_association_subject_type, o.metamorphosize.class.name)
Severity: Minor
Found in app/models/biological_association.rb by rubocop

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

    write_attribute(:biological_association_object_id, o.id)
Severity: Minor
Found in app/models/biological_association.rb by rubocop

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

    write_attribute(:biological_association_subject_id, o.id)
Severity: Minor
Found in app/models/biological_association.rb by rubocop

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

    write_attribute(:biological_association_object_type, o.metamorphosize.class.name)
Severity: Minor
Found in app/models/biological_association.rb by rubocop

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

TODO found
Open

  attr_accessor :object_global_id # TODO: this is badly named
Severity: Minor
Found in app/models/biological_association.rb by fixme

TODO found
Open

  # TODO: Why?! this is just biological_association.biological_association_subject_type
Severity: Minor
Found in app/models/biological_association.rb by fixme

TODO found
Open

  # TODO: Why?! this is just biological_association.biological_association_object_type
Severity: Minor
Found in app/models/biological_association.rb by fixme

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    j = a.join(b).on(a["biological_association_#{target}_type".to_sym].eq(target_class.name).and(a["biological_assoication_#{target}_id".to_sym].eq(b[:id])))
Severity: Minor
Found in app/models/biological_association.rb and 1 other location - About 20 mins to fix
app/models/biological_association.rb on lines 183..183

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 27.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Identical blocks of code found in 2 locations. Consider refactoring.
Open

    j = a.join(b).on(a["biological_association_#{target}_type".to_sym].eq(target_class.name).and(a["biological_assoication_#{target}_id".to_sym].eq(b[:id])))
Severity: Minor
Found in app/models/biological_association.rb and 1 other location - About 20 mins to fix
app/models/biological_association.rb on lines 174..174

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 27.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

Prefer the new style validations validates :column, uniqueness: value over validates_uniqueness_of.
Open

  validates_uniqueness_of :biological_association_subject_id, scope: [:biological_association_subject_type, :biological_association_object_id, :biological_association_object_type, :biological_relationship_id]
Severity: Minor
Found in app/models/biological_association.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

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