TODO found Open
# TODO: BiocurationGroup.biocuration_classes not returning AR relation- Exclude checks
TODO found Open
# TODO how should the user disambiguate which organization they are referring to?- Exclude checks
TODO found Open
# institutionCode: [repository.acronym] # TODO: Use mappings like with namespaces here as well? (Although probably attempt guessing)- Exclude checks
TODO found Open
# self.import_dataset.derived_people.merge(Person.where(attributes)).first || # TODO: Doesn't work, fails to detect Person subclasses. Why (besides explanation in Shared::OriginRelationship)?- Exclude checks
TODO found Open
identifier_type = Identifier::Local::TripCode # TODO: Or maybe Identifier::Local::Import?- Exclude checks
TODO found Open
# TODO: If all attributes are equal assume it is the same event and share it with other specimens? (eventID is an alternate method to detect duplicates)- Exclude checks
TODO found Open
# TODO: There are numerous very long methods here, we really need to break out logical chunks so that we can- Exclude checks
TODO found Open
otu: innermost_otu || innermost_protonym.otus.find_by(name: nil) || innermost_protonym.otus.first # TODO: Might require select-and-confirm functionality- Exclude checks
TODO found Open
'Verify the namespace delimiter is correct.' # TODO include link to namespace?- Exclude checks
TODO found Open
# sex: [Find or create by name inside Sex biocuration Group] TODO: Think of duplicates (with and without URI)- Exclude checks
unexpected token kRESCUE
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
rescue DarwinCore::InvalidData => invalid- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
super || Protonym.create({parent:, also_create_otu: true}.merge!(name))- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
predicate ||= Predicate.where(project:).find_by(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRBRACK
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
idx = higherClassification[curr..].index { |n| n[:name] == name[:name] }- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
biocuration_class ||= BiocurationClass.where(project:).joins(:tags).merge(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tASSOC
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
rescue DarwinCore::InvalidData => invalid- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
specimen.update!(collecting_event:)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
location_hash = {county:, state_province:, country:, country_code:}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
predicate:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
predicate:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
potential_protonyms = Protonym.where(name.slice(:rank_class, :year_of_publication).merge({ field => name[:name], cached_author: }).compact).with_ancestor(parent)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
biocuration_group ||= BiocurationGroup.where(project:).find_by(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
}.merge(attributes[:georeference]))- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
{rank_class: nil, name:}- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
tags.append({keyword:, annotator_batch_mode: true})- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
biocuration_class = BiocurationClass.where(project:).joins(:tags).merge(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
wildcard_original_protonym = wildcard_original_protonym.where(cached_author:)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
super || Protonym.create({parent:, also_create_otu: true}.merge!(name))- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
error_radius: get_field_value('coordinateUncertaintyInMeters'),- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
fossil_biocuration = BiocurationClass.where(project:).find_by(uri: DWC_FOSSIL_URI)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
collecting_event:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
type_type:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
BiocurationClassification.new(biocuration_class:)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
collecting_event:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
predicate ||= Predicate.where(project:).find_by(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
keyword ||= Keyword.where(project:).find_by(- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRCURLY
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
{ collecting_event: }- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
taxon_determination:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tRPAREN
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
potential_protonyms_narrowed = potential_protonyms_narrowed.where(cached_author:)- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
type_type:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
type_type:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token tCOMMA
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
predicate:,- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.
unexpected token $end
(Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops) Open
- Read upRead up
- Exclude checks
This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.