SpeciesFileGroup/taxonworks

View on GitHub
app/models/dwc_occurrence.rb

Summary

Maintainability
A
3 hrs
Test Coverage

Possible SQL injection
Open

    DwcOccurrence.joins("LEFT JOIN #{tbl} tbl on dwc_occurrences.dwc_occurrence_object_id = tbl.id")
Severity: Minor
Found in app/models/dwc_occurrence.rb by brakeman

Injection is #1 on the 2013 OWASP Top Ten web security risks. SQL injection is when a user is able to manipulate a value which is used unsafely inside a SQL query. This can lead to data leaks, data loss, elevation of privilege, and other unpleasant outcomes.

Brakeman focuses on ActiveRecord methods dealing with building SQL statements.

A basic (Rails 2.x) example looks like this:

User.first(:conditions => "username = '#{params[:username]}'")

Brakeman would produce a warning like this:

Possible SQL injection near line 30: User.first(:conditions => ("username = '#{params[:username]}'"))

The safe way to do this query is to use a parameterized query:

User.first(:conditions => ["username = ?", params[:username]])

Brakeman also understands the new Rails 3.x way of doing things (and local variables and concatenation):

username = params[:user][:name].downcase
password = params[:user][:password]

User.first.where("username = '" + username + "' AND password = '" + password + "'")

This results in this kind of warning:

Possible SQL injection near line 37:
User.first.where((((("username = '" + params[:user][:name].downcase) + "' AND password = '") + params[:user][:password]) + "'"))

See the Ruby Security Guide for more information and Rails-SQLi.org for many examples of SQL injection in Rails.

Method is_stale? has a Cognitive Complexity of 10 (exceeds 5 allowed). Consider refactoring.
Open

  def is_stale?
    case dwc_occurrence_object_type
    when 'CollectionObject'

      # Checks made on values, not time (necessary to handle lists)
Severity: Minor
Found in app/models/dwc_occurrence.rb - About 1 hr to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method basis has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

  def basis
    case dwc_occurrence_object_type
    when 'CollectionObject'
      if dwc_occurrence_object.is_fossil?
        return 'FossilSpecimen'
Severity: Minor
Found in app/models/dwc_occurrence.rb - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Method generate_uuid_if_required has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring.
Open

  def generate_uuid_if_required(force = false)
    if force # really make sure there is an object to work with
      create_object_uuid if !occurrence_identifier && !dwc_occurrence_object.nil? # TODO: can be simplified when inverse_of/validation added to identifiers
    else # assume if occurrenceID is not blank identifier is present
      if occurrenceID.blank?
Severity: Minor
Found in app/models/dwc_occurrence.rb - About 35 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid too many return statements within this method.
Open

        return 'Occurrence'
Severity: Major
Found in app/models/dwc_occurrence.rb - About 30 mins to fix

    Prefer self[:attr] over read_attribute(:attr).
    Open

          n = read_attribute(:updated_at) # || Time.current <- if this then never stale!
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by rubocop

    This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

    If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

    Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

    Example:

    # bad
    x = read_attribute(:attr)
    write_attribute(:attr, val)
    
    # good
    x = self[:attr]
    self[:attr] = val

    Prefer self[:attr] = val over write_attribute(:attr, val).
    Open

        write_attribute( :basisOfRecord, basis)
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by rubocop

    This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

    If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

    Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

    Example:

    # bad
    x = read_attribute(:attr)
    write_attribute(:attr, val)
    
    # good
    x = self[:attr]
    self[:attr] = val

    Prefer self[:attr] = val over write_attribute(:attr, val).
    Open

        write_attribute( :occurrenceID, occurrence_identifier&.identifier)
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by rubocop

    This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

    If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

    Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

    Example:

    # bad
    x = read_attribute(:attr)
    write_attribute(:attr, val)
    
    # good
    x = self[:attr]
    self[:attr] = val

    TODO found
    Open

            create_object_uuid if !occurrence_identifier && !dwc_occurrence_object.nil? # TODO: can be simplified when inverse_of/validation added to identifiers
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

        # TODO: hackish
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

          create_object_uuid if !occurrence_identifier && !dwc_occurrence_object.nil? # TODO: can be simplified when inverse_of/validation added to identifiers
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

    # TODO: The basisOfRecord CVTs are not super informative.
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

      # TODO -
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

      # !! TODO: When we come to adding AssertedDistributions, FieldOccurrnces, etc. we will have to
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

      # TODO: Consider using more broadly?
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

          .select(::DwcOccurrence.target_columns) # TODO !! Will have to change when AssertedDistribution and other types merge in
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    TODO found
    Open

      # TODO: quick check if occurrenceID exists in table?! <-> locking sync !?
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by fixme

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

      def self.asserted_distributions_join
        a = arel_table
        b = ::AssertedDistribution.arel_table
        j = a.join(b).on(a[:dwc_occurrence_object_type].eq('AssertedDistribution').and(a[:dwc_occurrence_object_id].eq(b[:id])))
        joins(j.join_sources)
    Severity: Minor
    Found in app/models/dwc_occurrence.rb and 1 other location - About 25 mins to fix
    app/models/dwc_occurrence.rb on lines 106..110

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 29.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Similar blocks of code found in 2 locations. Consider refactoring.
    Open

      def self.collection_objects_join
        a = arel_table
        b = ::CollectionObject.arel_table
        j = a.join(b).on(a[:dwc_occurrence_object_type].eq('CollectionObject').and(a[:dwc_occurrence_object_id].eq(b[:id])))
        joins(j.join_sources)
    Severity: Minor
    Found in app/models/dwc_occurrence.rb and 1 other location - About 25 mins to fix
    app/models/dwc_occurrence.rb on lines 115..119

    Duplicated Code

    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

    Tuning

    This issue has a mass of 29.

    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

    Refactorings

    Further Reading

    Prefer the new style validations validates :column, presence: value over validates_presence_of.
    Open

      validates_presence_of :basisOfRecord
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by rubocop

    This cop checks for the use of old-style attribute validation macros.

    Example:

    # bad
    validates_acceptance_of :foo
    validates_confirmation_of :foo
    validates_exclusion_of :foo
    validates_format_of :foo
    validates_inclusion_of :foo
    validates_length_of :foo
    validates_numericality_of :foo
    validates_presence_of :foo
    validates_absence_of :foo
    validates_size_of :foo
    validates_uniqueness_of :foo
    
    # good
    validates :foo, acceptance: true
    validates :foo, confirmation: true
    validates :foo, exclusion: true
    validates :foo, format: true
    validates :foo, inclusion: true
    validates :foo, length: true
    validates :foo, numericality: true
    validates :foo, presence: true
    validates :foo, absence: true
    validates :foo, size: true
    validates :foo, uniqueness: true

    Prefer symbols instead of strings as hash keys.
    Open

        'dwcClass' => 'class',
    Severity: Minor
    Found in app/models/dwc_occurrence.rb by rubocop

    This cop checks for the use of strings as keys in hashes. The use of symbols is preferred instead.

    Example:

    # bad
    { 'one' => 1, 'two' => 2, 'three' => 3 }
    
    # good
    { one: 1, two: 2, three: 3 }

    There are no issues that match your filters.

    Category
    Status