app/models/taxon_name_relationship/iczn/invalidating/homonym.rb
class TaxonNameRelationship::Iczn::Invalidating::Homonym < TaxonNameRelationship::Iczn::Invalidating
NOMEN_URI='http://purl.obolibrary.org/obo/NOMEN_0000289'.freeze
soft_validate(
:sv_validate_total_suppression,
set: :validate_homonym_relationships,
name: 'Validate total suppression',
description: 'Taxon should not be treated as homonym, since the related taxon is totally suppressed.' )
soft_validate(
:sv_missing_nomen_novum,
set: :validate_homonym_relationships,
name: 'Substitute name is not selected',
description: 'Please select a replacement or substitute name.' )
soft_validate(
:sv_missing_replacement_name,
set: :validate_homonym_relationships,
fix: :sv_fix_add_synonym_for_homonym,
name: 'Missing replacement name',
description: 'Please select a valid name using synonym relationships.' )
# soft_validate(:sv_not_specific_relationship,
# set: :not_specific_relationship,
# fix: :sv_fix_not_specific_relationship,
# name: 'Not specific homonym relationship',
# description: 'Check if homonymy could be defined as primary or secondary.' )
def self.disjoint_taxon_name_relationships
self.parent.disjoint_taxon_name_relationships +
self.collect_descendants_to_s(TaxonNameRelationship::Iczn::Invalidating::Usage) +
self.collect_to_s(TaxonNameRelationship::Iczn::Invalidating,
TaxonNameRelationship::Iczn::Invalidating::Synonym::Suppression::Total)
end
def self.disjoint_object_classes
self.parent.disjoint_object_classes +
self.collect_descendants_and_itself_to_s(TaxonNameClassification::Iczn::Unavailable)
end
def subject_properties
[ TaxonNameClassification::Iczn::Available::Invalid::Homonym ]
end
def object_status
'senior homonym'
end
def subject_status
'homonym'
end
def subject_status_connector_to_object
' of'
end
def object_status_connector_to_subject
' of'
end
def self.assignment_method
# bus.set_as_iczn_homonym_of(aus)
:iczn_set_as_homonym_of
end
# as.
def self.inverse_assignment_method
# aus.iczn_homonym = bus
:iczn_homonym
end
def sv_validate_total_suppression
if !self.object_taxon_name.iczn_set_as_total_suppression_of.nil?
soft_validations.add(:type, 'Taxon should not be treated as homonym, since the related taxon is totally suppressed')
end
end
def sv_missing_nomen_novum
if self.subject_taxon_name.iczn_set_as_synonym_of.nil? && self.subject_taxon_name.iczn_replacement_names.empty?
soft_validations.add(:type, 'Please select a replacement or substitute name')
end
end
def sv_missing_replacement_name
if self.subject_taxon_name.iczn_set_as_synonym_of.nil? && !self.subject_taxon_name.iczn_replacement_names.empty?
soft_validations.add(:type, 'Please select a valid name using synonym relationships',
success_message: 'Synonym relationship was added')
end
end
def sv_specific_relationship
s = subject_taxon_name
o = object_taxon_name
if (s.cached_primary_homonym_alternative_spelling != o.cached_primary_homonym_alternative_spelling)
if (s.cached_secondary_homonym_alternative_spelling.blank? && o.cached_secondary_homonym_alternative_spelling.blank?) || (s.cached_secondary_homonym_alternative_spelling != o.cached_secondary_homonym_alternative_spelling)
soft_validations.add(:type, "#{subject_taxon_name.cached_html_name_and_author_year} and #{object_taxon_name.cached_html_name_and_author_year} are not similar enough to be homonyms")
end
end
end
def sv_not_specific_relationship
if self.subject_taxon_name.is_species_rank?
soft_validations.add(
:type, 'Please specify if this is a primary or secondary homonym',
success_message: 'Homonym updated to being primary or secondary',
failure_message: 'Failed to update the homonym relationship')
end
end
def sv_fix_not_specific_relationship
subject_original_genus = self.subject_taxon_name.original_genus
object_original_genus = self.object_taxon_name.original_genus
subject_genus = self.subject_taxon_name.ancestor_at_rank('genus')
object_genus = self.object_taxon_name.ancestor_at_rank('genus')
new_relationship_name = nil
if subject_original_genus == object_original_genus && !subject_original_genus.nil?
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Homonym::Primary'
elsif subject_genus != object_genus && !subject_genus.nil?
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Homonym::Secondary'
end
if new_relationship_name && self.type_name != new_relationship_name
self.type = new_relationship_name
self.save
return true
end
false
end
def sv_validate_priority
date1 = self.subject_taxon_name.cached_nomenclature_date
date2 = self.object_taxon_name.cached_nomenclature_date
if !!date1 && !!date2 && date2 > date1 && subject_invalid_statuses.empty?
soft_validations.add(:type, "#{self.subject_status.capitalize} #{self.subject_taxon_name.cached_html_name_and_author_year} should not be older than #{self.object_status} #{self.object_taxon_name.cached_html_name_and_author_year}")
end
end
def sv_fix_add_synonym_for_homonym
if subject_taxon_name.iczn_set_as_synonym_of.nil?
unless subject_taxon_name.iczn_replacement_names.empty?
subject_taxon_name.iczn_set_as_synonym_of = object_taxon_name
begin
TaxonNameRelationship.transaction do
self.save
return true
end
rescue
end
end
end
false
end
def sv_synonym_relationship
true
end
end