app/models/taxon_name_relationship/iczn/invalidating/synonym.rb
class TaxonNameRelationship::Iczn::Invalidating::Synonym < TaxonNameRelationship::Iczn::Invalidating
NOMEN_URI='http://purl.obolibrary.org/obo/NOMEN_0000276'.freeze
#soft_validate(:sv_not_specific_relationship,
# set: :not_specific_relationship,
# fix: :sv_fix_not_specific_relationship,
# name: 'Not specific synonym relationship',
# description: 'Check if homonymy could be defined as objective or subjective.' )
def self.disjoint_taxon_name_relationships
self.parent.disjoint_taxon_name_relationships +
self.collect_descendants_to_s(TaxonNameRelationship::Iczn::Invalidating::Usage) +
[TaxonNameRelationship::Iczn::Invalidating.to_s]
end
def self.disjoint_object_classes
self.parent.disjoint_object_classes +
self.collect_descendants_and_itself_to_s(TaxonNameClassification::Iczn::Unavailable,
TaxonNameClassification::Iczn::Available::Invalid)
end
def object_status
'senior synonym'
end
def subject_status
'synonym'
end
def subject_status_connector_to_object
' of'
end
def object_status_connector_to_subject
' of'
end
def self.assignment_method
# bus.set_as_iczn_synonym_of(aus)
:iczn_set_as_synonym_of
end
# as.
def self.inverse_assignment_method
# aus.iczn_synonym = bus
:iczn_synonym
end
def sv_synonym_relationship
if self.source
date1 = self.source.cached_nomenclature_date.to_time
date2 = self.subject_taxon_name.cached_nomenclature_date
if !!date1 && !!date2
soft_validations.add(:base, "#{self.subject_taxon_name.cached_html_name_and_author_year} was not described at the time of citation (#{date1.to_date})") if date2.to_date > date1.to_date
end
else
soft_validations.add(:base, 'The original publication is not selected')
end
end
def sv_not_specific_relationship
soft_validations.add(:type, 'Please specify if this is a objective or subjective synonym',
success_message: 'Synonym updated to being objective or subjective',
failure_message: 'Failed to update the synonym relationship')
end
def sv_fix_not_specific_relationship
s = self.subject_taxon_name
o = self.object_taxon_name
subject_type = s.type_taxon_name
object_type = o.type_taxon_name
new_relationship_name = self.type_name
if (subject_type == object_type && !subject_type.nil? ) || (!s.get_primary_type.empty? && s.has_same_primary_type(o) )
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective'
elsif (subject_type != object_type && !subject_type.nil? ) || (!s.get_primary_type.empty? && !o.get_primary_type.empty? && !s.has_same_primary_type(o))
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Synonym::Subjective'
end
if new_relationship_name && self.type_name != new_relationship_name
self.type = new_relationship_name
self.save
return true
end
false
end
end