SpeciesFileGroup/taxonworks

<div>
  <h2> Genbank batch file load </h2>

  <div class="flexbox full_viewport_whitespace">
    <div class="item item1 one_third_width">
      <h3> Description and requirements </h3>

      <p>Creates sequences and origin relationships and attaches at most 2 identifiers to each sequence</p>
      <ul>
        <li>A tab-delimited, UTF-8 compatible text file is required.</li>
        <li>Sample file (see <%= link_to('&iSEQID00000349_&vDRMDNA4144_&g28S_&pPUB003_&nLionepha_chintimini_OR_4144.fas', asset_path('batch_file_load_templates/sequences/sequences_genbank_batch_load.tab'), target: '_blank') -%>).</li>
        <li>Multiple uploads of the same data will fail.</li>
        <li>Assumes a namespace with name "DRMSequenceId" and shortname "DRMSEQID" exists</li>
        <li>Assumes filename has information about sequence</li>
        <li>There is currently some|no size limit to the file being loaded but this may change in the future.</li>
        <li>Identifier Global::GenBankAccessionCode will be attached with the value of the voucher number if not blank to each sequence</li>
        <li>Identifier with namespace DRMSequenceId will be attached with the value of the sequence id if not blank to each sequence</li>
        <li>Creates origin relationship between sequence and extract that has an attached Identifier of namespace GenBank matching the sequences GenBank voucher identifier.</li>
      </ul>
    </div>

    <div class="item item2 one_third_width">
      <h3> Example file </h3>

      <p> A tab delimited formatted file. In the example whitespace is a tab. View sample file.</p>

      <pre class="fixed_width_font">
        >DNA1299 
        aactttatattttgtttttggtgcctgatcaggaatagtaggaacttcactaagcatattaatccgtgc...gctcat
      </pre>
    </div>

    <div class="item item3">
      <h3> Go! </h3>
      <%= render partial: '/sequences/batch_file_load/genbank/form', locals: {url: preview_genbank_batch_file_load_sequences_path, submit: :preview} -%>
    </div>
  </div>
</div>