SpeciesFileGroup/taxonworks

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Redundant receiver in with_options.
Open

    s.validates :total, inclusion: { in: 1..1 }, presence: true
Severity: Minor
Found in app/models/specimen.rb by rubocop

This cop checks for redundant receiver in with_options. Receiver is implicit from Rails 4.2 or higher.

Example:

# bad
class Account < ApplicationRecord
  with_options dependent: :destroy do |assoc|
    assoc.has_many :customers
    assoc.has_many :products
    assoc.has_many :invoices
    assoc.has_many :expenses
  end
end

# good
class Account < ApplicationRecord
  with_options dependent: :destroy do
    has_many :customers
    has_many :products
    has_many :invoices
    has_many :expenses
  end
end

Example:

# bad
with_options options: false do |merger|
  merger.invoke(merger.something)
end

# good
with_options options: false do
  invoke(something)
end

# good
client = Client.new
with_options options: false do |merger|
  client.invoke(merger.something, something)
end

# ok
# When `with_options` includes a block, all scoping scenarios
# cannot be evaluated. Thus, it is ok to include the explicit
# receiver.
with_options options: false do |merger|
  merger.invoke
  with_another_method do |another_receiver|
    merger.invoke(another_receiver)
  end
end

Avoid more than 3 levels of block nesting.
Open

            search_name = z.nil? ? nil : Protonym::FAMILY_GROUP_ENDINGS.collect{|i| z+i}

This cop checks for excessive nesting of conditional and looping constructs.

You can configure if blocks are considered using the CountBlocks option. When set to false (the default) blocks are not counted towards the nesting level. Set to true to count blocks as well.

The maximum level of nesting allowed is configurable.

Use save! instead of save if the return value is not checked.
Open

          c.save

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Avoid using update_column because it skips validations.
Open

          self.update_column(:verbatim_author, t.verbatim_author)

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

Redundant receiver in with_options.
Open

    r.validates_presence_of :ranged_lot_category_id
Severity: Minor
Found in app/models/ranged_lot.rb by rubocop

This cop checks for redundant receiver in with_options. Receiver is implicit from Rails 4.2 or higher.

Example:

# bad
class Account < ApplicationRecord
  with_options dependent: :destroy do |assoc|
    assoc.has_many :customers
    assoc.has_many :products
    assoc.has_many :invoices
    assoc.has_many :expenses
  end
end

# good
class Account < ApplicationRecord
  with_options dependent: :destroy do
    has_many :customers
    has_many :products
    has_many :invoices
    has_many :expenses
  end
end

Example:

# bad
with_options options: false do |merger|
  merger.invoke(merger.something)
end

# good
with_options options: false do
  invoke(something)
end

# good
client = Client.new
with_options options: false do |merger|
  client.invoke(merger.something, something)
end

# ok
# When `with_options` includes a block, all scoping scenarios
# cannot be evaluated. Thus, it is ok to include the explicit
# receiver.
with_options options: false do |merger|
  merger.invoke
  with_another_method do |another_receiver|
    merger.invoke(another_receiver)
  end
end

Specify a :dependent option.
Open

    has_many relationships, class_name: d.name.to_s, foreign_key: :object_sequence_id, inverse_of: :object_sequence
Severity: Minor
Found in app/models/sequence.rb by rubocop

This cop looks for has_many or has_one associations that don't specify a :dependent option. It doesn't register an offense if :through option was specified.

Example:

# bad
class User < ActiveRecord::Base
  has_many :comments
  has_one :avatar
end

# good
class User < ActiveRecord::Base
  has_many :comments, dependent: :restrict_with_exception
  has_one :avatar, dependent: :destroy
  has_many :patients, through: :appointments
end

Prefer 1.week.
Open

            .where(t['updated_at'].gt( 1.weeks.ago ))
Severity: Minor
Found in app/models/sequence.rb by rubocop

This cop checks for correct grammar when using ActiveSupport's core extensions to the numeric classes.

Example:

# bad
3.day.ago
1.months.ago

# good
3.days.ago
1.month.ago

Prefer self[:attr] = val over write_attribute(:attr, val).
Open

      write_attribute(:metadata, JSON.parse(value))
Severity: Minor
Found in app/models/sled_image.rb by rubocop

This cop checks for the use of the read_attribute or write_attribute methods and recommends square brackets instead.

If an attribute is missing from the instance (for example, when initialized by a partial select) then read_attribute will return nil, but square brackets will raise an ActiveModel::MissingAttributeError.

Explicitly raising an error in this situation is preferable, and that is why rubocop recommends using square brackets.

Example:

# bad
x = read_attribute(:attr)
write_attribute(:attr, val)

# good
x = self[:attr]
self[:attr] = val

Prefer the new style validations validates :column, presence: value over validates_presence_of.
Open

  validates_presence_of :image
Severity: Minor
Found in app/models/sled_image.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

Avoid using update_column because it skips validations.
Open

      update_column(:type, type)
Severity: Minor
Found in app/models/source/verbatim.rb by rubocop

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

Prefer the new style validations validates :column, presence: value over validates_presence_of.
Open

  validates_presence_of :verbatim, if: -> { type == 'Source::Verbatim' }
Severity: Minor
Found in app/models/source/verbatim.rb by rubocop

This cop checks for the use of old-style attribute validation macros.

Example:

# bad
validates_acceptance_of :foo
validates_confirmation_of :foo
validates_exclusion_of :foo
validates_format_of :foo
validates_inclusion_of :foo
validates_length_of :foo
validates_numericality_of :foo
validates_presence_of :foo
validates_absence_of :foo
validates_size_of :foo
validates_uniqueness_of :foo

# good
validates :foo, acceptance: true
validates :foo, confirmation: true
validates :foo, exclusion: true
validates :foo, format: true
validates :foo, inclusion: true
validates :foo, length: true
validates :foo, numericality: true
validates :foo, presence: true
validates :foo, absence: true
validates :foo, size: true
validates :foo, uniqueness: true

Redundant receiver in with_options.
Open

    s.before_validation :check_and_set_total
Severity: Minor
Found in app/models/specimen.rb by rubocop

This cop checks for redundant receiver in with_options. Receiver is implicit from Rails 4.2 or higher.

Example:

# bad
class Account < ApplicationRecord
  with_options dependent: :destroy do |assoc|
    assoc.has_many :customers
    assoc.has_many :products
    assoc.has_many :invoices
    assoc.has_many :expenses
  end
end

# good
class Account < ApplicationRecord
  with_options dependent: :destroy do
    has_many :customers
    has_many :products
    has_many :invoices
    has_many :expenses
  end
end

Example:

# bad
with_options options: false do |merger|
  merger.invoke(merger.something)
end

# good
with_options options: false do
  invoke(something)
end

# good
client = Client.new
with_options options: false do |merger|
  client.invoke(merger.something, something)
end

# ok
# When `with_options` includes a block, all scoping scenarios
# cannot be evaluated. Thus, it is ok to include the explicit
# receiver.
with_options options: false do |merger|
  merger.invoke
  with_another_method do |another_receiver|
    merger.invoke(another_receiver)
  end
end

unexpected token tRPAREN (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

    sd.any? ? sd.first : SqedDepiction.where(project_id:).first
Severity: Minor
Found in app/models/sqed_depiction.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Use find_each instead of each.
Open

      ObservationMatrixRowItem::Dynamic::Tag.where(observation_object_type: 'ControlledVocabularyTerm', observation_object_id:  keyword_id).each do |mri|
Severity: Minor
Found in app/models/tag/matrix_hooks.rb by rubocop

This cop is used to identify usages of all.each and change them to use all.find_each instead.

Example:

# bad
User.all.each

# good
User.all.find_each

unexpected token kEND (Using Ruby 2.4 parser; configure using TargetRubyVersion parameter, under AllCops)
Open

  end
Severity: Minor
Found in app/models/taxon_name.rb by rubocop

This is not actually a cop. It does not inspect anything. It just provides methods to repack Parser's diagnostics/errors into RuboCop's offenses.

Avoid using update_columns because it skips validations.
Open

          i.update_columns(atr)
Severity: Minor
Found in app/models/protonym/becomes.rb by rubocop

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

Avoid more than 3 levels of block nesting.
Open

            unless type.nil?
              possible_synonyms = Protonym.with_type_of_taxon_names(type.id).not_self(self).with_project(self.project_id)
            end

This cop checks for excessive nesting of conditional and looping constructs.

You can configure if blocks are considered using the CountBlocks option. When set to false (the default) blocks are not counted towards the nesting level. Set to true to count blocks as well.

The maximum level of nesting allowed is configurable.

Avoid more than 3 levels of block nesting.
Open

            if !list1.empty?
              list1.each do |s|
                soft_validations.add(:base, "Missing relationship: #{self.cached_html_name_and_author_year} should be a homonym or duplicate of #{s.cached_html_name_and_author_year}") if s.nomenclatural_code == self.nomenclatural_code
              end
            end

This cop checks for excessive nesting of conditional and looping constructs.

You can configure if blocks are considered using the CountBlocks option. When set to false (the default) blocks are not counted towards the nesting level. Set to true to count blocks as well.

The maximum level of nesting allowed is configurable.

Avoid using update_column because it skips validations.
Open

      self.update_column(:verbatim_author, nil)

This cop checks for the use of methods which skip validations which are listed in https://guides.rubyonrails.org/active_record_validations.html#skipping-validations

Methods may be ignored from this rule by configuring a Whitelist.

Example:

# bad
Article.first.decrement!(:view_count)
DiscussionBoard.decrement_counter(:post_count, 5)
Article.first.increment!(:view_count)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active
product.touch
Billing.update_all("category = 'authorized', author = 'David'")
user.update_attribute(:website, 'example.com')
user.update_columns(last_request_at: Time.current)
Post.update_counters 5, comment_count: -1, action_count: 1

# good
user.update(website: 'example.com')
FileUtils.touch('file')

Example: Whitelist: ["touch"]

# bad
DiscussionBoard.decrement_counter(:post_count, 5)
DiscussionBoard.increment_counter(:post_count, 5)
person.toggle :active

# good
user.touch

Prefer 1.week.
Open

      .where(t['updated_at'].gt( 1.weeks.ago ))
Severity: Minor
Found in app/models/sequence.rb by rubocop

This cop checks for correct grammar when using ActiveSupport's core extensions to the numeric classes.

Example:

# bad
3.day.ago
1.months.ago

# good
3.days.ago
1.month.ago
Severity
Category
Status
Source
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