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Use find_by instead of dynamic find_by_api_access_token.
Open

      @project = Project.find_by_api_access_token(params[:project_token])
Severity: Minor
Found in app/controllers/api/v1/stats_controller.rb by rubocop

This cop checks dynamic find_by_* methods. Use find_by instead of dynamic method. See. https://github.com/rubocop-hq/rails-style-guide#find_by

Example:

# bad
User.find_by_name(name)

# bad
User.find_by_name_and_email(name)

# bad
User.find_by_email!(name)

# good
User.find_by(name: name)

# good
User.find_by(name: name, email: email)

# good
User.find_by!(email: email)

Use destroy! instead of destroy if the return value is not checked.
Open

    @biological_associations_graph.destroy
Severity: Minor
Found in app/controllers/biological_associations_graphs_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Use 2 (not 4) spaces for indentation.
Open

    def set_citation_topic
Severity: Minor
Found in app/controllers/citation_topics_controller.rb by rubocop

This cop checks for indentation that doesn't use the specified number of spaces.

See also the IndentationConsistency cop which is the companion to this one.

Example:

# bad
class A
 def test
  puts 'hello'
 end
end

# good
class A
  def test
    puts 'hello'
  end
end

Example: IgnoredPatterns: ['^\s*module']

# bad
module A
class B
  def test
  puts 'hello'
  end
end
end

# good
module A
class B
  def test
    puts 'hello'
  end
end
end

Use find_by instead of dynamic find_by_id.
Open

    @citation = Citation.find_by_id(params[:id]).metamorphosize
Severity: Minor
Found in app/controllers/citations_controller.rb by rubocop

This cop checks dynamic find_by_* methods. Use find_by instead of dynamic method. See. https://github.com/rubocop-hq/rails-style-guide#find_by

Example:

# bad
User.find_by_name(name)

# bad
User.find_by_name_and_email(name)

# bad
User.find_by_email!(name)

# good
User.find_by(name: name)

# good
User.find_by(name: name, email: email)

# good
User.find_by!(email: email)

Use destroy! instead of destroy if the return value is not checked.
Open

    @controlled_vocabulary_term.destroy
Severity: Minor
Found in app/controllers/controlled_vocabulary_terms_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Prefer single-quoted strings when you don't need string interpolation or special symbols.
Open

      headers = import_dataset.metadata["core_headers"]
Severity: Minor
Found in app/controllers/dataset_records_controller.rb by rubocop

Checks if uses of quotes match the configured preference.

Example: EnforcedStyle: single_quotes (default)

# bad
"No special symbols"
"No string interpolation"
"Just text"

# good
'No special symbols'
'No string interpolation'
'Just text'
"Wait! What's #{this}!"

Example: EnforcedStyle: double_quotes

# bad
'Just some text'
'No special chars or interpolation'

# good
"Just some text"
"No special chars or interpolation"
"Every string in #{project} uses double_quotes"

Use destroy! instead of destroy if the return value is not checked.
Open

    @depiction.destroy
Severity: Minor
Found in app/controllers/depictions_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Use find_by instead of dynamic find_by_id.
Open

    @note = Note.find_by_id(params[:id]).metamorphosize
Severity: Minor
Found in app/controllers/notes_controller.rb by rubocop

This cop checks dynamic find_by_* methods. Use find_by instead of dynamic method. See. https://github.com/rubocop-hq/rails-style-guide#find_by

Example:

# bad
User.find_by_name(name)

# bad
User.find_by_name_and_email(name)

# bad
User.find_by_email!(name)

# good
User.find_by(name: name)

# good
User.find_by(name: name, email: email)

# good
User.find_by!(email: email)

Use destroy! instead of destroy if the return value is not checked.
Open

    @otu.destroy
Severity: Minor
Found in app/controllers/otus_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

similar is not explicitly defined on the class.
Open

  before_action :set_person, only: [:show, :edit, :update, :destroy, :roles, :similar, :api_show]
Severity: Minor
Found in app/controllers/people_controller.rb by rubocop

This cop checks that methods specified in the filter's only or except options are defined within the same class or module.

You can technically specify methods of superclass or methods added by mixins on the filter, but these can confuse developers. If you specify methods that are defined in other classes or modules, you should define the filter in that class or module.

If you rely on behaviour defined in the superclass actions, you must remember to invoke super in the subclass actions.

Example:

# bad
class LoginController < ApplicationController
  before_action :require_login, only: %i[index settings logout]

  def index
  end
end

# good
class LoginController < ApplicationController
  before_action :require_login, only: %i[index settings logout]

  def index
  end

  def settings
  end

  def logout
  end
end

Example:

# bad
module FooMixin
  extend ActiveSupport::Concern

  included do
    before_action proc { authenticate }, only: :foo
  end
end

# good
module FooMixin
  extend ActiveSupport::Concern

  included do
    before_action proc { authenticate }, only: :foo
  end

  def foo
    # something
  end
end

Example:

class ContentController < ApplicationController
  def update
    @content.update(content_attributes)
  end
end

class ArticlesController < ContentController
  before_action :load_article, only: [:update]

  # the cop requires this method, but it relies on behaviour defined
  # in the superclass, so needs to invoke `super`
  def update
    super
  end

  private

  def load_article
    @content = Article.find(params[:article_id])
  end
end

Use destroy! instead of destroy if the return value is not checked.
Open

    @sequence_relationship.destroy
Severity: Minor
Found in app/controllers/sequence_relationships_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

create returns a model which is always truthy.
Open

      if @result.create
Severity: Minor
Found in app/controllers/sequences_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Use find_by instead of dynamic find_by_id.
Open

    @data_attribute = DataAttribute.find_by_id(params[:id])
Severity: Minor
Found in app/controllers/data_attributes_controller.rb by rubocop

This cop checks dynamic find_by_* methods. Use find_by instead of dynamic method. See. https://github.com/rubocop-hq/rails-style-guide#find_by

Example:

# bad
User.find_by_name(name)

# bad
User.find_by_name_and_email(name)

# bad
User.find_by_email!(name)

# good
User.find_by(name: name)

# good
User.find_by(name: name, email: email)

# good
User.find_by!(email: email)

Use 2 (not 4) spaces for indentation.
Open

    def dataset_record_params
Severity: Minor
Found in app/controllers/dataset_records_controller.rb by rubocop

This cop checks for indentation that doesn't use the specified number of spaces.

See also the IndentationConsistency cop which is the companion to this one.

Example:

# bad
class A
 def test
  puts 'hello'
 end
end

# good
class A
  def test
    puts 'hello'
  end
end

Example: IgnoredPatterns: ['^\s*module']

# bad
module A
class B
  def test
  puts 'hello'
  end
end
end

# good
module A
class B
  def test
    puts 'hello'
  end
end
end

Use destroy! instead of destroy if the return value is not checked.
Open

    @descriptor.destroy
Severity: Minor
Found in app/controllers/descriptors_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Prefer symbols instead of strings as hash keys.
Open

    }.collect{|b| {'name' => b.name, 'type' => b.type } }
Severity: Minor
Found in app/controllers/dwc_occurrences_controller.rb by rubocop

This cop checks for the use of strings as keys in hashes. The use of symbols is preferred instead.

Example:

# bad
{ 'one' => 1, 'two' => 2, 'three' => 3 }

# good
{ one: 1, two: 2, three: 3 }

Use 2 (not 4) spaces for indentation.
Open

    def gene_attribute_params
Severity: Minor
Found in app/controllers/gene_attributes_controller.rb by rubocop

This cop checks for indentation that doesn't use the specified number of spaces.

See also the IndentationConsistency cop which is the companion to this one.

Example:

# bad
class A
 def test
  puts 'hello'
 end
end

# good
class A
  def test
    puts 'hello'
  end
end

Example: IgnoredPatterns: ['^\s*module']

# bad
module A
class B
  def test
  puts 'hello'
  end
end
end

# good
module A
class B
  def test
    puts 'hello'
  end
end
end

Use destroy! instead of destroy if the return value is not checked.
Open

    @citation.destroy
Severity: Minor
Found in app/controllers/citations_controller.rb by rubocop

This cop identifies possible cases where Active Record save! or related should be used instead of save because the model might have failed to save and an exception is better than unhandled failure.

This will allow: - update or save calls, assigned to a variable, or used as a condition in an if/unless/case statement. - create calls, assigned to a variable that then has a call to persisted?. - calls if the result is explicitly returned from methods and blocks, or provided as arguments. - calls whose signature doesn't look like an ActiveRecord persistence method.

By default it will also allow implicit returns from methods and blocks. that behavior can be turned off with AllowImplicitReturn: false.

You can permit receivers that are giving false positives with AllowedReceivers: []

Example:

# bad
user.save
user.update(name: 'Joe')
user.find_or_create_by(name: 'Joe')
user.destroy

# good
unless user.save
  # ...
end
user.save!
user.update!(name: 'Joe')
user.find_or_create_by!(name: 'Joe')
user.destroy!

user = User.find_or_create_by(name: 'Joe')
unless user.persisted?
  # ...
end

def save_user
  return user.save
end

Example: AllowImplicitReturn: true (default)

# good
users.each { |u| u.save }

def save_user
  user.save
end

Example: AllowImplicitReturn: false

# bad
users.each { |u| u.save }
def save_user
  user.save
end

# good
users.each { |u| u.save! }

def save_user
  user.save!
end

def save_user
  return user.save
end

Example: AllowedReceivers: ['merchant.customers', 'Service::Mailer']

# bad
merchant.create
customers.builder.save
Mailer.create

module Service::Mailer
  self.create
end

# good
merchant.customers.create
MerchantService.merchant.customers.destroy
Service::Mailer.update(message: 'Message')
::Service::Mailer.update
Services::Service::Mailer.update(message: 'Message')
Service::Mailer::update

Prefer symbols instead of strings as hash keys.
Open

        'end_month'   => 'end_date_month',
Severity: Minor
Found in app/controllers/collection_objects_controller.rb by rubocop

This cop checks for the use of strings as keys in hashes. The use of symbols is preferred instead.

Example:

# bad
{ 'one' => 1, 'two' => 2, 'three' => 3 }

# good
{ one: 1, two: 2, three: 3 }

Prefer symbols instead of strings as hash keys.
Open

        'end_year'    => 'end_date_year'}
Severity: Minor
Found in app/controllers/collection_objects_controller.rb by rubocop

This cop checks for the use of strings as keys in hashes. The use of symbols is preferred instead.

Example:

# bad
{ 'one' => 1, 'two' => 2, 'three' => 3 }

# good
{ one: 1, two: 2, three: 3 }
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