Gemfile
source 'https://rubygems.org'
gem "rails", "3.2.19"
gem "rdoc"
gem "feedjira","~>1"
gem "google-analytics-rails"
gem 'hpricot',"~>0.8.2"
gem 'ruby-openid'
gem 'rack-openid'
gem 'libxml-ruby',">=2.6.0",:require=>"libxml"
gem 'uuidtools'
gem "RedCloth","4.2.9"
gem 'simple-spreadsheet-extractor',"~>0.13.3"
gem "rmagick","2.13.2", :require => 'RMagick'
gem "mysql2"
gem 'rest-client',">=1.6.1"
gem 'factory_girl', "2.6.4"
gem 'rubyzip', "~> 1.1.4"
gem 'bio'
gem 'sunspot_rails'
gem 'sunspot_solr'
gem 'savon',"1.1.0"
gem "dynamic_form"
gem "prototype-rails"
gem "delayed_job_active_record"
gem "daemons"
gem "cancan"
gem "in_place_editing"
gem "linkeddata"
gem "equivalent-xml"
gem "breadcrumbs_on_rails"
gem 'docsplit'
gem "pothoven-attachment_fu"
gem "exception_notification"
gem "fssm"
gem 'acts-as-taggable-on',"3.0.1"
gem 'acts_as_list'
gem 'acts_as_tree'
gem 'country-select'
gem 'modporter-plugin'
gem "will_paginate", "~> 3.0.4"
gem 'calendar_date_select', :git => 'git://github.com/paneq/calendar_date_select.git'
gem "yaml_db"
gem 'rails_autolink'
gem 'rfc-822'
gem 'nokogiri'
gem 'rdf-virtuoso', ">=0.1.6"
gem 'cocaine'
gem 'colorize'
gem 'lograge'
gem 'psych'
gem 'transaction_isolation'
#gem for BiVeS and BudHat
gem 'bives'
#Linked to SysMO Git repositories
gem 'gibberish', :git => "git://github.com/SysMO-DB/gibberish.git"
gem 'white_list', :git => "git://github.com/SysMO-DB/white_list.git"
gem 'white_list_formatted_content', :git => "git://github.com/SysMO-DB/white_list_formatted_content.git"
gem 'my_rails_settings', :git => "git://github.com/SysMO-DB/my_rails_settings.git", :require=>"settings"
gem 'piwik_analytics',:git=>"git://github.com/SysMO-DB/piwik-ruby-tracking.git"
gem 'my_savage_beast', :git => "git://github.com/SysMO-DB/my_savage_beast"
gem 'redbox', :git=>"git://github.com/SysMO-DB/redbox"
gem "my_responds_to_parent", :git => "git://github.com/SysMO-DB/my_responds_to_parent.git"
gem 'site_announcements', :git => "git://github.com/SysMO-DB/site_announcements.git"
gem 'open_id_authentication', :git => "git://github.com/SysMO-DB/open_id_authentication.git"
gem 'bioportal',">=2.2"
gem 'acts_as_activity_logged', :git => "git://github.com/SysMO-DB/acts_as_activity_logged.git"
gem 'acts_as_trashable',:git=> "git://github.com/SysMO-DB/acts_as_trashable.git"
gem "app_version", :git => "git://github.com/SysMO-DB/app_version.git"
gem 'doi_query_tool', :git => "git://github.com/SysMO-DB/doi_query_tool.git"
gem 'convert_office',:git=>"git://github.com/SysMO-DB/convert_office.git", :ref=>"753f2567dbd625bc89071e1150404efbb562e130"
gem "fleximage", :git=>"git://github.com/SysMO-DB/fleximage"
gem 'search_biomodel', "2.2.1",:git=>"git://github.com/myGrid/search_biomodel.git"
gem 'my_annotations', :git=>"git://github.com/myGrid/annotations.git"
gem 'passenger'
gem 'unicorn-rails'
gem "recaptcha", '0.3.1'
gem 'metainspector'
gem 'mechanize'
group :assets do
gem 'turbo-sprockets-rails3'
end
gem 'taverna-t2flow'
gem "taverna-player", :git=>"git://github.com/myGrid/taverna-player.git", :branch => 'list-inputs'
gem 'jquery-rails', '~> 3'
group :development do
gem "pry"
gem "pry-doc"
gem "pry-remote"
gem "request-log-analyzer"
gem "rubocop",:require=>false
gem "rubycritic",:require=>false
gem "guard-rubycritic",:require=>false
end
group :test do
gem 'test_after_commit'
gem "sqlite3"
gem "ruby-prof"
gem "webmock"
gem 'minitest-reporters','~> 0.14'
gem 'coveralls', require: false
gem 'rspec-rails'
gem 'sunspot_matchers'
end
group :assets do
gem 'yui-compressor'
end