Method execute has 98 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $instances = CommandHelper::getInstances('upgrade');
        $instancesInfo = CommandHelper::getInstancesInfo($instances);
        $tiki_namespace = true;

File Svn.php has 330 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php
/**
 * @copyright (c) Copyright by authors of the Tiki Manager Project. All Rights Reserved.
 *     See copyright.txt for details and a complete list of authors.
 * @licence Licensed under the GNU LESSER GENERAL PUBLIC LICENSE. See LICENSE for details.

Method execute has 97 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $helper = $this->getHelper('question');

        $instances = CommandHelper::getInstances('all', true);

Function execute has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $currentCwd = getcwd();
        $instancesOpt = $input->getOption('instances');
        $excludesOpt = $input->getOption('exclude');

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Function execute has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        if (empty($this->instancesInfo)) {
            $output->writeln('<comment>No instances available to detect.</comment>');
            return;

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Function applyPatch has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.

Open

    public function applyPatch(Patch $patch, $options)
    {
        $access = $this->instance->getBestAccess('scripting');
        $vcsType = $this->vcs_instance->getIdentifier();
        $can_patch = $access->hasExecutable('patch');

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Restore has 30 functions (exceeds 20 allowed). Consider refactoring.

Open

class Restore extends Backup
{
    const CLONE_PROCESS = 'clone';
    const RESTORE_PROCESS = 'restore';

Method setupDatabase has 91 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public function setupDatabase(Instance $instance, $reconfigure = false): Instance
    {
        try {
            if (!$reconfigure && $this->testExistingDbConnection($instance)) {
                return $instance;

Function readManifest has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.

Open

    public function readManifest($manifestPath)
    {
        $access = $this->getAccess();

        if ($this->direct && $this->source->type == 'local') {

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Application has 29 functions (exceeds 20 allowed). Consider refactoring.

Open

abstract class Application
{
    protected $instance;

    /** @var TikiManagerStyle $io */

Method restore has 87 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public function restore($srcInstance, $archive, $clone = false, $checksumCheck = false, $direct = false, $onlyData = false, $onlyCode = false, $options = [])
    {
        $restore = new Restore($this, $direct, $onlyData);
        $restore->lock();
        $restore->setProcess($clone);

Function getSVNPath has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

Open

    public function getSVNPath()
    {
        $host = $this->getHost();

        if (strtoupper(substr(PHP_OS, 0, 3)) === 'WIN') {

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File Database.php has 307 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php
// Copyright (c) 2016, Avan.Tech, et. al.
// Copyright (c) 2008, Luis Argerich, Garland Foster, Eduardo Polidor, et. al.
// All Rights Reserved. See copyright.txt for details and a complete list of authors.
// Licensed under the GNU LESSER GENERAL PUBLIC LICENSE. See license.txt for details.

Function restore has a Cognitive Complexity of 23 (exceeds 5 allowed). Consider refactoring.

Open

    public function restore($srcInstance, $archive, $clone = false, $checksumCheck = false, $direct = false, $onlyData = false, $onlyCode = false, $options = [])
    {
        $restore = new Restore($this, $direct, $onlyData);
        $restore->lock();
        $restore->setProcess($clone);

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Function copyDirectories has a Cognitive Complexity of 23 (exceeds 5 allowed). Consider refactoring.

Open

    public function copyDirectories($targets, $backupDir)
    {
        $access = $this->getAccess();
        $backupDir = $backupDir ?: $this->backupDir;
        $result = [];

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Function getAvailableBranches has a Cognitive Complexity of 23 (exceeds 5 allowed). Consider refactoring.

Open

    public function getAvailableBranches()
    {
        $versions = [];

        foreach (explode("\n", `git ls-remote --heads --tags --refs $this->repositoryUrl`) as $line) {

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Method execute has 80 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $checksumCheck = $input->getOption('check') ?? false;
        $instancesOption = $input->getOption('instances');
        $instances = CommandHelper::getInstances('update');

SSH has 27 functions (exceeds 20 allowed). Consider refactoring.

Open

class SSH extends Access implements ShellPrompt
{
    private $location;
    private $env = [];
    private $changeLocation = null;

Local has 27 functions (exceeds 20 allowed). Consider refactoring.

Open

class Local extends Access implements ShellPrompt
{
    private $location;
    private $env = [];
    private $hostlib = null;

Method configure has 79 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function configure()
    {
        parent::configure();

        $this