Function execute has a Cognitive Complexity of 37 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $email = $input->getOption('email');

        if (empty($email) || !filter_var($email, FILTER_VALIDATE_EMAIL)) {

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Method configure has 139 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function configure()
    {
        parent::configure();

        $this

File functions.php has 397 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php

define('DS', DIRECTORY_SEPARATOR);

require_once dirname(__DIR__) . '/Requirements/Requirements.php';

Function readManifest has a Cognitive Complexity of 36 (exceeds 5 allowed). Consider refactoring.

Open

    public function readManifest($manifestPath)
    {
        $differentInstance = $this->instance->getId() != $this->getSourceInstance()->getId();

        $skipPathCheck = ($this->allowCommonParents < 0) || (count(explode('/', $this->instance->webroot)) < $this->allowCommonParents);

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Method execute has 135 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $instances = CommandHelper::getInstances('update');
        $instancesInfo = CommandHelper::getInstancesInfo($instances);
        $enableMaintenance = empty($input->getOption('no-maintenance'));

Function execute has a Cognitive Complexity of 35 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $maxBackups = $input->getOption('max-backups') ?: Environment::get('DEFAULT_MAX_BACKUPS', 0);
        if (isset($maxBackups) && filter_var($maxBackups, FILTER_VALIDATE_INT) === false) {
            $this->io->error('Max number of backups to keep by instance is not a number');

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Function restoreFolder has a Cognitive Complexity of 35 (exceeds 5 allowed). Consider refactoring.

Open

    public function restoreFolder($src, $target, $isFull = false)
    {
        $access = $this->getAccess();
        $instance = $this->instance;
        $src = rtrim($src, '/\\');

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File Environment.php has 385 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php
/**
 * @copyright (c) Copyright by authors of the Tiki Manager Project. All Rights Reserved.
 *     See copyright.txt for details and a complete list of authors.
 * @licence Licensed under the GNU LESSER GENERAL PUBLIC LICENSE. See LICENSE for details.

Function detectWebrootOS has a Cognitive Complexity of 34 (exceeds 5 allowed). Consider refactoring.

Open

    protected function detectWebrootOS()
    {
        $user = $this->detectUser();
        $domain = parse_url($this->instance->weburl)['host'];

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Method restoreFolder has 127 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public function restoreFolder($src, $target, $isFull = false)
    {
        $access = $this->getAccess();
        $instance = $this->instance;
        $src = rtrim($src, '/\\');

Method setupInstance has 119 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    public function setupInstance(Instance $instance, $import = false) : Instance
    {
        $url = $this->input->getOption('url') ?: $instance->getDiscovery()->detectWeburl();
        $url = $this->io->ask('WebUrl', $url, function ($value) {
            if (empty($value)) {

Function restoreFilesFromFolder has a Cognitive Complexity of 32 (exceeds 5 allowed). Consider refactoring.

Open

    protected function restoreFilesFromFolder(string $srcFolder)
    {
        $manifest = "{$srcFolder}/manifest.txt";
        $folders = $this->readManifest($manifest);

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File Local.php has 361 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php
// Copyright (c) 2016, Avan.Tech, et. al.
// Copyright (c) 2008, Luis Argerich, Garland Foster, Eduardo Polidor, et. al.
// All Rights Reserved. See copyright.txt for details and a complete list of authors.
// Licensed under the GNU LESSER GENERAL PUBLIC LICENSE. See license.txt for details.

Method execute has 116 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        // select time handle
        $time = $input->getOption('time');
        CommandHelper::validateCrontabInput($time);

Git has 35 functions (exceeds 20 allowed). Consider refactoring.

Open

class Git extends VersionControlSystem
{
    protected const DEFAULT_GIT_REPOSITORY = 'https://gitlab.com/tikiwiki/tiki.git';
    protected $isDefultRepository = false;

Method configure has 108 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function configure()
    {
        parent::configure();

        $this

Function runSetup has a Cognitive Complexity of 29 (exceeds 5 allowed). Consider refactoring.

Open

    private function runSetup()
    {
        debug('Running Tiki Manager at ' . $_ENV['TRIM_ROOT']);

        $writableFolders = ['CACHE_FOLDER', 'TEMP_FOLDER', 'RSYNC_FOLDER', 'MOUNT_FOLDER', 'BACKUP_FOLDER', 'ARCHIVE_FOLDER', 'TRIM_LOGS', 'TRIM_DATA', 'TRIM_SRC_FOLDER'];

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Method execute has 104 lines of code (exceeds 25 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        $currentCwd = getcwd();
        $instancesOpt = $input->getOption('instances');
        $excludesOpt = $input->getOption('exclude');

File SSH.php has 338 lines of code (exceeds 250 allowed). Consider refactoring.

Open

<?php
// Copyright (c) 2016, Avan.Tech, et. al.
// Copyright (c) 2008, Luis Argerich, Garland Foster, Eduardo Polidor, et. al.
// All Rights Reserved. See copyright.txt for details and a complete list of authors.
// Licensed under the GNU LESSER GENERAL PUBLIC LICENSE. See license.txt for details.

Function execute has a Cognitive Complexity of 28 (exceeds 5 allowed). Consider refactoring.

Open

    protected function execute(InputInterface $input, OutputInterface $output)
    {
        // select time handle
        $time = $input->getOption('time');
        CommandHelper::validateCrontabInput($time);

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