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TimothyStiles/poly

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primers/pcr/pcr.go

Summary

Maintainability
A
0 mins
Test Coverage

Function SimulateSimple has a Cognitive Complexity of 67 (exceeds 20 allowed). Consider refactoring.
Wontfix

func SimulateSimple(sequences []string, targetTm float64, circular bool, primerList []string) []string {
    // Set all primers to uppercase.
    for primerIndex := range primerList {
        primerList[primerIndex] = strings.ToUpper(primerList[primerIndex])
    }
Severity: Minor
Found in primers/pcr/pcr.go - About 1 day to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function SimulateSimple has 70 lines of code (exceeds 50 allowed). Consider refactoring.
Wontfix

func SimulateSimple(sequences []string, targetTm float64, circular bool, primerList []string) []string {
    // Set all primers to uppercase.
    for primerIndex := range primerList {
        primerList[primerIndex] = strings.ToUpper(primerList[primerIndex])
    }
Severity: Minor
Found in primers/pcr/pcr.go - About 1 hr to fix

    Function generatePcrFragments has 7 arguments (exceeds 4 allowed). Consider refactoring.
    Wontfix

    func generatePcrFragments(sequence string, forwardLocation int, reverseLocation int, forwardPrimerIndxs []int, reversePrimerIndxs []int, minimalPrimers []string, primerList []string) []string {
    Severity: Major
    Found in primers/pcr/pcr.go - About 50 mins to fix

      error strings should not be capitalized or end with punctuation or a newline
      Wontfix

              return initialAmplification, errors.New("Concatemerization detected in PCR.")
      Severity: Minor
      Found in primers/pcr/pcr.go by golint

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