WenjieDu/PyPOTS

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Similar blocks of code found in 2 locations. Consider refactoring.
Open

        if training:  # for training
            (observed_data, indicating_mask, cond_mask, observed_tp, feature_id) = (
                inputs["X_ori"],
                inputs["indicating_mask"],
                inputs["cond_mask"],
Severity: Major
Found in pypots/forecasting/csdi/core.py and 1 other location - About 5 hrs to fix
pypots/forecasting/csdi/core.py on lines 102..114

Duplicated Code

Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

Tuning

This issue has a mass of 89.

We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

Refactorings

Further Reading

File data.py has 375 lines of code (exceeds 250 allowed). Consider refactoring.
Open

"""

"""

# Created by Linglong Qian, Joseph Arul Raj <linglong.qian@kcl.ac.uk, joseph_arul_raj@kcl.ac.uk>
Severity: Minor
Found in pypots/imputation/csai/data.py - About 5 hrs to fix

    File model.py has 369 lines of code (exceeds 250 allowed). Consider refactoring.
    Open

    """
    The implementation of GP-VAE for the partially-observed time-series imputation task.
    
    """
    
    
    Severity: Minor
    Found in pypots/imputation/gpvae/model.py - About 4 hrs to fix

      File model.py has 367 lines of code (exceeds 250 allowed). Consider refactoring.
      Open

      """
      The implementation of CSDI for the partially-observed time-series imputation task.
      
      """
      
      
      Severity: Minor
      Found in pypots/imputation/csdi/model.py - About 4 hrs to fix

        File base.py has 366 lines of code (exceeds 250 allowed). Consider refactoring.
        Open

        """
        The base classes for PyPOTS classification models.
        """
        
        # Created by Wenjie Du <wenjay.du@gmail.com>
        Severity: Minor
        Found in pypots/classification/base.py - About 4 hrs to fix

          File base.py has 365 lines of code (exceeds 250 allowed). Consider refactoring.
          Open

          """
          The base classes for PyPOTS forecasting models.
          """
          
          # Created by Wenjie Du <wenjay.du@gmail.com>
          Severity: Minor
          Found in pypots/forecasting/base.py - About 4 hrs to fix

            File base.py has 365 lines of code (exceeds 250 allowed). Consider refactoring.
            Open

            """
            The base class for PyPOTS imputation models.
            """
            
            # Created by Wenjie Du <wenjay.du@gmail.com>
            Severity: Minor
            Found in pypots/imputation/base.py - About 4 hrs to fix

              File model.py has 364 lines of code (exceeds 250 allowed). Consider refactoring.
              Open

              """
              The implementation of USGAN for the partially-observed time-series imputation task.
              
              """
              
              
              Severity: Minor
              Found in pypots/imputation/usgan/model.py - About 4 hrs to fix

                File model.py has 362 lines of code (exceeds 250 allowed). Consider refactoring.
                Open

                """
                The implementation of CRLI (Clustering Representation Learning on Incomplete time-series data) for
                the partially-observed time-series clustering task.
                
                """
                Severity: Minor
                Found in pypots/clustering/crli/model.py - About 4 hrs to fix

                  File base.py has 362 lines of code (exceeds 250 allowed). Consider refactoring.
                  Open

                  """
                  The base classes for PyPOTS clustering models.
                  """
                  
                  # Created by Wenjie Du <wenjay.du@gmail.com>
                  Severity: Minor
                  Found in pypots/clustering/base.py - About 4 hrs to fix

                    Similar blocks of code found in 2 locations. Consider refactoring.
                    Open

                            elif not training and n_sampling_times == 0:  # for validating
                                (observed_data, indicating_mask, cond_mask, observed_tp) = (
                                    inputs["X_ori"],
                                    inputs["indicating_mask"],
                                    inputs["cond_mask"],
                    Severity: Major
                    Found in pypots/imputation/csdi/core.py and 1 other location - About 4 hrs to fix
                    pypots/imputation/csdi/core.py on lines 85..94

                    Duplicated Code

                    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                    Tuning

                    This issue has a mass of 80.

                    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                    Refactorings

                    Further Reading

                    Similar blocks of code found in 2 locations. Consider refactoring.
                    Open

                            if training:  # for training
                                (observed_data, indicating_mask, cond_mask, observed_tp) = (
                                    inputs["X_ori"],
                                    inputs["indicating_mask"],
                                    inputs["cond_mask"],
                    Severity: Major
                    Found in pypots/imputation/csdi/core.py and 1 other location - About 4 hrs to fix
                    pypots/imputation/csdi/core.py on lines 95..106

                    Duplicated Code

                    Duplicated code can lead to software that is hard to understand and difficult to change. The Don't Repeat Yourself (DRY) principle states:

                    Every piece of knowledge must have a single, unambiguous, authoritative representation within a system.

                    When you violate DRY, bugs and maintenance problems are sure to follow. Duplicated code has a tendency to both continue to replicate and also to diverge (leaving bugs as two similar implementations differ in subtle ways).

                    Tuning

                    This issue has a mass of 80.

                    We set useful threshold defaults for the languages we support but you may want to adjust these settings based on your project guidelines.

                    The threshold configuration represents the minimum mass a code block must have to be analyzed for duplication. The lower the threshold, the more fine-grained the comparison.

                    If the engine is too easily reporting duplication, try raising the threshold. If you suspect that the engine isn't catching enough duplication, try lowering the threshold. The best setting tends to differ from language to language.

                    See codeclimate-duplication's documentation for more information about tuning the mass threshold in your .codeclimate.yml.

                    Refactorings

                    Further Reading

                    File base.py has 350 lines of code (exceeds 250 allowed). Consider refactoring.
                    Open

                    """
                    The base dataset class.
                    """
                    
                    # Created by Wenjie Du <wenjay.du@gmail.com>
                    Severity: Minor
                    Found in pypots/data/dataset/base.py - About 4 hrs to fix

                      Function __init__ has a Cognitive Complexity of 27 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def __init__(
                              self,
                              n_out_steps,
                              n_in_steps,
                              n_in_features,
                      Severity: Minor
                      Found in pypots/nn/modules/scinet/backbone.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function get_phi_psi has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.
                      Open

                      def get_phi_psi(k, base):
                          x = Symbol("x")
                          phi_coeff = np.zeros((k, k))
                          phi_2x_coeff = np.zeros((k, k))
                          if base == "legendre":
                      Severity: Minor
                      Found in pypots/nn/modules/fedformer/layers.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function _setup_device has a Cognitive Complexity of 26 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _setup_device(self, device: Union[None, str, torch.device, list]) -> None:
                              if device is None:
                                  # if it is None, then use the first cuda device if cuda is available, otherwise use cpu
                                  if torch.cuda.is_available() and torch.cuda.device_count() > 0:
                                      self.device = torch.device("cuda")
                      Severity: Minor
                      Found in pypots/base.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function _train_model has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _train_model(
                              self,
                              training_loader: DataLoader,
                              val_loader: DataLoader = None,
                          ) -> None:
                      Severity: Minor
                      Found in pypots/forecasting/base.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function _train_model has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _train_model(
                              self,
                              training_loader: DataLoader,
                              val_loader: DataLoader = None,
                          ) -> None:
                      Severity: Minor
                      Found in pypots/forecasting/csdi/model.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function _train_model has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _train_model(
                              self,
                              training_loader: DataLoader,
                              val_loader: DataLoader = None,
                          ) -> None:
                      Severity: Minor
                      Found in pypots/classification/base.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

                      Function _train_model has a Cognitive Complexity of 25 (exceeds 5 allowed). Consider refactoring.
                      Open

                          def _train_model(
                              self,
                              training_loader: DataLoader,
                              val_loader: DataLoader = None,
                          ) -> None:
                      Severity: Minor
                      Found in pypots/imputation/gpvae/model.py - About 3 hrs to fix

                      Cognitive Complexity

                      Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

                      A method's cognitive complexity is based on a few simple rules:

                      • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
                      • Code is considered more complex for each "break in the linear flow of the code"
                      • Code is considered more complex when "flow breaking structures are nested"

                      Further reading

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