Sign upLogin

almlab/angst

View on GitHub
Star
angst_lib/AnGSTHelper.py

Summary

Maintainability
C
1 day
Test Coverage

Function RunAnGST has a Cognitive Complexity of 72 (exceeds 5 allowed). Consider refactoring.
Open

def RunAnGST(input_dict):

    # unpack input variables
    input_info = input_dict['input_info']
    mem_str = input_dict['mem_str']
Severity: Minor
Found in angst_lib/AnGSTHelper.py - About 1 day to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Avoid deeply nested control flow statements.
Open

                    if node_pair[0].name == model.outgroup:
                        node_link.TryRoot(node_pair)
                    if node_pair[1].name == model.outgroup:
Severity: Major
Found in angst_lib/AnGSTHelper.py - About 45 mins to fix

    Avoid deeply nested control flow statements.
    Open

                        if node_pair[1].name == model.outgroup:
                        node_link.TryRoot(node_pair)
                else:
    Severity: Major
    Found in angst_lib/AnGSTHelper.py - About 45 mins to fix

      There are no issues that match your filters.

      Category
      Status