File routes.py has 373 lines of code (exceeds 250 allowed). Consider refactoring.

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from pathlib import Path
from os.path import sep
from pkg_resources import require
from shutil import which
from datetime import datetime

File data.py has 356 lines of code (exceeds 250 allowed). Consider refactoring.

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import platform
import subprocess
import os
import shutil
from pathlib import Path

File cmd_exec.py has 311 lines of code (exceeds 250 allowed). Consider refactoring.

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import os
import shutil
import subprocess
import sys
import tempfile

Function command_args has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

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    def command_args(self, command_index) -> List[str]:
        """
        Convert the post request into a list of command line arguments

        :param command_index: (int) the index for the command to get arguments for.

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Function extract_content has a Cognitive Complexity of 24 (exceeds 5 allowed). Consider refactoring.

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    def extract_content(self, beautsoup, selector=None):
        """converts html bookmark url to optimized markdown and saves images"""

        url = self.url.rstrip("/")

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Function override has a Cognitive Complexity of 18 (exceeds 5 allowed). Consider refactoring.

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    def override(self, user_conf: dict, nested_dict=None):
        """
        This function enables an override of the default configuration with user values.

        Acts smartly so as to only set options already set in the default config.

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File input_fields.py has 267 lines of code (exceeds 250 allowed). Consider refactoring.

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import click

from archivy.click_web.web_click_types import EmailParamType, PasswordParamType

Function config has a Cognitive Complexity of 15 (exceeds 5 allowed). Consider refactoring.

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def config():
    """
    Web View to edit and update configuration.
    """

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Function _process_option has a Cognitive Complexity of 14 (exceeds 5 allowed). Consider refactoring.

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    def _process_option(self, field_info):
        vals = request.form.getlist(field_info.key)
        if field_info.is_file:
            if field_info.link_name:
                # it's a file, append the file path

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Function get_items has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

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def get_items(
    collections=[], path="", structured=True, json_format=False, load_content=False
):
    """
    Gets all dataobjs.

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Function build_dir_tree has a Cognitive Complexity of 13 (exceeds 5 allowed). Consider refactoring.

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def build_dir_tree(path, query_dir, load_content=False):
    """
    Builds a structured tree of directories and data objects.

    - **path**: name of the directory relative to the root directory.

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Function process_bookmark_url has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

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    def process_bookmark_url(self, raw_html=None):
        """Process url to get content for bookmark"""
        if self.type not in ("bookmark", "pocket_bookmark") or not validators.url(
            self.url
        ):

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Function query_ripgrep has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

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def query_ripgrep(query):
    """
    Uses ripgrep to search data with a simpler setup than ES.
    Returns a list of dicts with detailed matches.
    """

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Function type_attrs has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

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    def type_attrs(self):
        type_attrs = {}
        if isinstance(self.param.type, click.File):
            mode = self.param.type.mode
        elif isinstance(self.param.type, click.Path):

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Function config_form has a Cognitive Complexity of 12 (exceeds 5 allowed). Consider refactoring.

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def config_form(current_conf, sub=0, allowed=vars(Config())):
    """
    This function defines a Config form that loads default configuration values and creates inputs for each field option

    - current_conf: object of current configuration that we will use to set the defaults

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Function __init__ has 8 arguments (exceeds 4 allowed). Consider refactoring.

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    def __init__(

Function factory has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

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    def factory(key):
        field_id = FieldId.from_string(key)
        is_file = field_id.click_type.startswith("file")
        is_path = field_id.click_type.startswith("path")
        is_uploaded = key in request.files

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Function unformat_file has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

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def unformat_file(path: str, out_dir: str):
    """
    Converts normal md of file at `path` to formatted archivy markdown file, with yaml front matter
    and a filename of format "{id}-{old_filename}.md"
    """

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Function _process_help has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

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def _process_help(help_text):
    """
    Convert click command help into html to be presented to browser.
    Respects the '\b' char used by click to mark pre-formatted blocks.
    Also escapes html reserved characters in the help text.

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Function search_frontmatter_tags has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.

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def search_frontmatter_tags(tag=None):
    """
    Returns a list of dataobj ids that have the given tag.
    """
    from archivy.data import get_data_dir

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