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bel/nanopub/files.py

Summary

Maintainability
A
3 hrs
Test Coverage

Function read_nanopubs has a Cognitive Complexity of 19 (exceeds 5 allowed). Consider refactoring.
Open

def read_nanopubs(fn: str) -> Iterable[Mapping[str, Any]]:
    """Read file and generate nanopubs

    If filename has *.gz, will read as a gzip file
    If filename has *.jsonl*, will parsed as a JSONLines file
Severity: Minor
Found in bel/nanopub/files.py - About 2 hrs to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

Function create_nanopubs_fh has a Cognitive Complexity of 9 (exceeds 5 allowed). Consider refactoring.
Open

def create_nanopubs_fh(output_fn: str):
    """Create Nanopubs output filehandle

    \b
    If output fn is '-' will write JSONlines to STDOUT
Severity: Minor
Found in bel/nanopub/files.py - About 55 mins to fix

Cognitive Complexity

Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.

A method's cognitive complexity is based on a few simple rules:

  • Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
  • Code is considered more complex for each "break in the linear flow of the code"
  • Code is considered more complex when "flow breaking structures are nested"

Further reading

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