File bel.py has 386 lines of code (exceeds 250 allowed). Consider refactoring. Open
# Standard Library
import copy
import enum
import json
import reFunction collect_orthologs has a Cognitive Complexity of 8 (exceeds 5 allowed). Consider refactoring. Open
def collect_orthologs(self, species_keys: List[Key] = settings.BEL_ORTHOLOGIZE_TARGETS):
"""Get orthologs for BelEntity is orthologizable"""
self.add_entity_types()
self.normalize()- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function __init__ has 5 arguments (exceeds 4 allowed). Consider refactoring. Open
def __init__(Function normalize has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
def normalize(
self,
canonical_targets: Mapping[str, List[str]] = settings.BEL_CANONICALIZE,
decanonical_targets: Mapping[str, List[str]] = settings.BEL_DECANONICALIZE,
):- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function add_term has a Cognitive Complexity of 7 (exceeds 5 allowed). Consider refactoring. Open
def add_term(self):
"""Add term info"""
if self.namespace_metadata and self.namespace_metadata.namespace_type == "complete":
self.term = bel.terms.terms.get_term(self.nsval.key)- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function __init__ has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def __init__(self, term_key: Key = "", nsval: Optional[NsVal] = None):
"""Create BelEntity via a term_key or a NsVal object
You cannot provide a term_key_label string (e.g. NS:ID:LABEL) as a term_key
"""- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"
Further reading
Function add_entity_types has a Cognitive Complexity of 6 (exceeds 5 allowed). Consider refactoring. Open
def add_entity_types(self):
"""get entity_types to BEL Entity"""
if self.entity_types:
return self- Read upRead up
Cognitive Complexity
Cognitive Complexity is a measure of how difficult a unit of code is to intuitively understand. Unlike Cyclomatic Complexity, which determines how difficult your code will be to test, Cognitive Complexity tells you how difficult your code will be to read and comprehend.
A method's cognitive complexity is based on a few simple rules:
- Code is not considered more complex when it uses shorthand that the language provides for collapsing multiple statements into one
- Code is considered more complex for each "break in the linear flow of the code"
- Code is considered more complex when "flow breaking structures are nested"