bio-miga/miga-web

<%= plot_quality(
      res[:stats][:completeness][0], res[:stats][:contamination][0],
      res[:stats][:quality]) unless res[:stats][:quality].nil? %>

<p>Genes commonly found in Bacteria and Archaea detected:</p>
<% unless res.file_path(:report).nil? %>
  <div class="panel panel-default" id="essential_genes">
    <div class=panel-heading role=tab id=essential_genes-h>
      <h4 class=panel-title>
        <a role=button data-toggle=collapse data-parent="#essential_genes"
              class=btn href="#essential_genes-b" aria-expanded=false
              aria-controls=essential_genes-b>
          Full report
        </a>
      </h4>
    </div>
    <div id=essential_genes-b class="panel-collapse collapse" role=tabpanel
          aria-labelledby=essential_genes-h>
      <div class="panel-body" style="padding-top:0;">
        <%
        File.open(res.file_path(:report), "r") do |fh|
          fh.each_line do |ln| %>
        <br/>
        <%  if ln =~ /^!   (\d+ )?([^:]+): (\S+: )?(.*)/
              url = $2[0..3] == "TIGR" ?
                "http://www.jcvi.org/cgi-bin/tigrfams/HmmReportPage.cgi?acc=" :
                "http://pfam.xfam.org/family/"
              %>
              &nbsp;&nbsp;<b><%= $1 %><a target=_blank rel=noopener
                href="<%= "#{url}#{$2}" %>"><%= $2 %></a>: <%= $3 %></b>
                <%= $4 %>
        <%  else %>
             <%= ln.gsub(/^! ([^:]+):/, "<b>\\1:</b>").html_safe %>
        <%  end
          end
        end
      %></div>
    </div>
  </div>
<% end %>